Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SDSE_RS19775 Genome accession   NC_019042
Coordinates   1874796..1875287 (-) Length   163 a.a.
NCBI ID   WP_002983122.1    Uniprot ID   A0A9X8XIP7
Organism   Streptococcus dysgalactiae subsp. equisimilis AC-2713     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1869796..1880287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDSE_RS19760 (S_dysgal_equisimilis_AC2713_1932) - 1872529..1873473 (+) 945 WP_003059456.1 magnesium transporter CorA family protein -
  SDSE_RS19765 (S_dysgal_equisimilis_AC2713_1933) - 1873605..1874261 (+) 657 WP_003059462.1 DUF1129 domain-containing protein -
  SDSE_RS19770 (S_dysgal_equisimilis_AC2713_1934) rpsR 1874392..1874631 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  SDSE_RS19775 (S_dysgal_equisimilis_AC2713_1935) ssb 1874796..1875287 (-) 492 WP_002983122.1 single-stranded DNA-binding protein Machinery gene
  SDSE_RS19780 (S_dysgal_equisimilis_AC2713_1936) rpsF 1875309..1875599 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  SDSE_RS22120 (SDSE_1967) - 1876558..1876851 (-) 294 WP_015058032.1 hypothetical protein -
  SDSE_RS19790 (S_dysgal_equisimilis_AC2713_1937) mutY 1877017..1878183 (+) 1167 WP_003055161.1 A/G-specific adenine glycosylase -
  SDSE_RS21555 - 1878262..1879617 (+) 1356 Protein_1774 IS3 family transposase -
  SDSE_RS19805 (S_dysgal_equisimilis_AC2713_1941) trxA 1879678..1879992 (-) 315 WP_003052691.1 thioredoxin -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17981.76 Da        Isoelectric Point: 4.8894

>NTDB_id=54321 SDSE_RS19775 WP_002983122.1 1874796..1875287(-) (ssb) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=54321 SDSE_RS19775 WP_002983122.1 1874796..1875287(-) (ssb) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTATTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362

Multiple sequence alignment