Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   JZI48_RS06755 Genome accession   NZ_CP071145
Coordinates   1385607..1386293 (+) Length   228 a.a.
NCBI ID   WP_214897096.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain 470_007     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1380607..1391293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZI48_RS06735 (JZI48_06735) rsmG 1382319..1382978 (-) 660 WP_214494886.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  JZI48_RS06740 (JZI48_06740) - 1383114..1383671 (+) 558 WP_012677410.1 LemA family protein -
  JZI48_RS06745 (JZI48_06745) htpX 1383708..1384601 (+) 894 WP_012680072.1 zinc metalloprotease HtpX -
  JZI48_RS06750 (JZI48_06750) - 1384889..1385422 (+) 534 WP_050316018.1 YceD family protein -
  JZI48_RS06755 (JZI48_06755) covR 1385607..1386293 (+) 687 WP_214897096.1 two-component system response regulator CovR Regulator
  JZI48_RS06760 (JZI48_06760) - 1386297..1387787 (+) 1491 WP_012680070.1 HAMP domain-containing histidine kinase -
  JZI48_RS06765 (JZI48_06765) nrdR 1387978..1388472 (+) 495 WP_012516251.1 transcriptional regulator NrdR -
  JZI48_RS06770 (JZI48_06770) - 1388456..1389619 (+) 1164 WP_173292518.1 helicase loader -
  JZI48_RS06775 (JZI48_06775) dnaI 1389620..1390528 (+) 909 WP_012680068.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26556.58 Da        Isoelectric Point: 4.5906

>NTDB_id=543185 JZI48_RS06755 WP_214897096.1 1385607..1386293(+) (covR) [Streptococcus equi subsp. equi strain 470_007]
MTKKILIIEDEKNLARFVSLELQLEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREY
DLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=543185 JZI48_RS06755 WP_214897096.1 1385607..1386293(+) (covR) [Streptococcus equi subsp. equi strain 470_007]
ATGACAAAGAAAATTTTAATTATCGAAGATGAAAAGAATCTTGCAAGATTTGTTTCGCTTGAGCTACAGCTTGAGGGTTA
CGAGGTGACCGTCGAGGTTAATGGTCGTGAGGGCTTGGAGACAGCCCTAGAGAAGGACTTTGACTTAATCCTTCTTGATT
TGATGCTTCCTGAGATGGACGGATTTGAAGTGACACGTCGATTGCAAACAGAAAAAACGACTTACATCATGATGATGACT
GCGCGTGACTCTATTATGGACGTTGTAGCTGGCTTGGATCGTGGTGCTGACGATTACATCGTGAAGCCATTTGCCATTGA
GGAATTGCTGGCGCGTATTCGTGCTATCTTCCGTCGTCAGGACATTGAGTCAGAGAAAAAGACTCCTAGTCAAGGCGTTT
ACCGCGACTTAGTCTTAAACCCTCAAAACCGCTCTGTCAATCGCGGTGATGACGAGATTTCACTGACTAAGCGTGAATAT
GACCTGCTTAATATTTTGATGACAAACATGAATCGTGTCATGACTCGTGAGGAGCTCTTGTCTAACGTTTGGAAATATGA
CGAGGCTGTTGAAACTAACGTTGTTGATGTTTATATTCGTTACCTTCGTGGGAAGATCGATATCCCTGGGAAAGAGTCTT
ACATTCAAACTGTTCGTGGAATGGGTTATGTGATTCGCGAGAAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.096

100

0.825
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.96

99.561

0.667
  vicR Streptococcus mutans UA159

43.29

100

0.439
  micA Streptococcus pneumoniae Cp1015

42.174

100

0.425