Detailed information NTG0543037

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: JZI57_RS02635
• Genome accession: NZ_CP071142
• Coordinates: 549257..550291 (-)
• Length: 344 a.a.
• NCBI ID: WP_012678811.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. equi strain 489_004
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 544257..555291

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JZI57_RS02600 (JZI57_02600)	comYH	545077..546030 (-)	954	WP_012678816.1	class I SAM-dependent methyltransferase	Machinery gene
JZI57_RS02605 (JZI57_02605)	-	546115..547457 (-)	1343	Protein_525	IS3 family transposase	-
JZI57_RS02610 (JZI57_02610)	comGG	547522..547884 (-)	363	WP_012678815.1	competence type IV pilus minor pilin ComGG	-
JZI57_RS02615 (JZI57_02615)	comYF	547862..548296 (-)	435	WP_012678814.1	competence type IV pilus minor pilin ComGF	Machinery gene
JZI57_RS02620 (JZI57_02620)	comGE	548283..548573 (-)	291	WP_012678813.1	competence type IV pilus minor pilin ComGE	-
JZI57_RS02625 (JZI57_02625)	comGD	548530..548955 (-)	426	WP_012678812.1	competence type IV pilus minor pilin ComGD	-
JZI57_RS02630 (JZI57_02630)	comGC/cglC	548933..549256 (-)	324	WP_012514782.1	competence type IV pilus major pilin ComGC	Machinery gene
JZI57_RS02635 (JZI57_02635)	comYB	549257..550291 (-)	1035	WP_012678811.1	competence type IV pilus assembly protein ComGB	Machinery gene
JZI57_RS02640 (JZI57_02640)	comGA/cglA	550224..551162 (-)	939	WP_012678810.1	competence type IV pilus ATPase ComGA	Machinery gene
JZI57_RS02645 (JZI57_02645)	-	551344..551991 (-)	648	WP_012678809.1	ATP-binding cassette domain-containing protein	-
JZI57_RS02650 (JZI57_02650)	-	551993..553996 (-)	2004	WP_012678808.1	DUF1430 domain-containing protein	-
JZI57_RS02655 (JZI57_02655)	-	554533..554898 (-)	366	WP_012514777.1	DUF1033 family protein	-

Sequence

Protein

• Length: 344 a.a.
• Molecular weight: 39431.69 Da
• Isoelectric Point: 9.4359

>NTDB_id=543037 JZI57_RS02635 WP_012678811.1 549257..550291(-) (comYB) [Streptococcus equi subsp. equi strain 489_004]
MISFLRRDISIPGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNTLTDLLL
HLPHYFLGFCLLVLLLIGSFYLYAKSCSRLKLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQQMGDVF

Nucleotide

• Length: 1035 bp

>NTDB_id=543037 JZI57_RS02635 WP_012678811.1 549257..550291(-) (comYB) [Streptococcus equi subsp. equi strain 489_004]
TTGATCAGCTTCTTGCGGAGGGACATCTCAATACCAGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAGGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGACTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATTATACTTTTGGGTTTTC
TAGTGGTTATCATGCTAGGCTTGCGTCATTACCTAATCCCTCAGCTAGAGAGTCAAAATACCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGTTTTTGTTTGCTTGTGCTGTTGCTAATTGGCTCTTTTTACCTATATGCCAAGTCCTG
TAGTCGGCTAAAACTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTAAGCCTAATGATTGAATATGGTGACATCAAATCAAAGCTTGGTCAGGAATTAGATATCT
ATTCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTTAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACAGATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (215-335)

• Type II secretion system (T2SS), protein F (T2SSF) (29-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	53.982	98.547	0.532
comYB	Streptococcus mutans UA159	53.982	98.547	0.532
comYB	Streptococcus gordonii str. Challis substr. CH1	52.059	98.837	0.515
comGB/cglB	Streptococcus mitis NCTC 12261	48.81	97.674	0.477
comGB/cglB	Streptococcus mitis SK321	49.249	96.802	0.477
comGB/cglB	Streptococcus pneumoniae Rx1	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae D39	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae R6	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae TIGR4	48.649	96.802	0.471
comGB	Lactococcus lactis subsp. cremoris KW2	46.933	94.767	0.445