Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JYA70_RS13415 | Genome accession | NZ_CP071102 |
| Coordinates | 2713247..2713717 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934761.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain CI/BAC/25/13/W | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2691076..2718877 | 2713247..2713717 | within | 0 |
Gene organization within MGE regions
Location: 2691076..2718877
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JYA70_RS13270 (JYA70_002653) | groES | 2691076..2691360 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| JYA70_RS13275 (JYA70_002654) | groL | 2691436..2693052 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| JYA70_RS13280 (JYA70_002655) | - | 2693586..2694893 (-) | 1308 | WP_001045085.1 | TrkH family potassium uptake protein | - |
| JYA70_RS13285 (JYA70_002656) | - | 2695815..2696225 (+) | 411 | WP_247653467.1 | hypothetical protein | - |
| JYA70_RS13290 (JYA70_002657) | - | 2696947..2698171 (-) | 1225 | Protein_2589 | ArgE/DapE family deacylase | - |
| JYA70_RS13295 (JYA70_002658) | lukH | 2698607..2699659 (+) | 1053 | WP_000791404.1 | bi-component leukocidin LukGH subunit H | - |
| JYA70_RS13300 (JYA70_002659) | lukG | 2699681..2700697 (+) | 1017 | WP_000595325.1 | bi-component leukocidin LukGH subunit G | - |
| JYA70_RS13305 (JYA70_002660) | sph | 2700935..2701759 (-) | 825 | Protein_2592 | sphingomyelin phosphodiesterase | - |
| JYA70_RS13310 (JYA70_002661) | - | 2701816..2702853 (-) | 1038 | WP_000857191.1 | site-specific integrase | - |
| JYA70_RS13315 (JYA70_002662) | - | 2702912..2703376 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| JYA70_RS13320 (JYA70_002663) | - | 2703476..2703658 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| JYA70_RS13325 (JYA70_002664) | - | 2703862..2704203 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| JYA70_RS13330 (JYA70_002665) | - | 2704209..2705141 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| JYA70_RS13335 (JYA70_002666) | - | 2705157..2705870 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| JYA70_RS13340 (JYA70_002667) | - | 2705833..2706006 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| JYA70_RS13345 (JYA70_002668) | - | 2706003..2706266 (+) | 264 | WP_000854070.1 | helix-turn-helix transcriptional regulator | - |
| JYA70_RS13350 (JYA70_002669) | - | 2706282..2706497 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| JYA70_RS13355 (JYA70_002670) | - | 2706486..2706821 (-) | 336 | WP_070958043.1 | hypothetical protein | - |
| JYA70_RS13360 (JYA70_002671) | - | 2706872..2707624 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| JYA70_RS13365 (JYA70_002672) | - | 2707640..2707837 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| JYA70_RS13370 (JYA70_002673) | - | 2707824..2708204 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| JYA70_RS13375 (JYA70_002674) | - | 2708259..2708582 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| JYA70_RS13380 (JYA70_002675) | - | 2708579..2708740 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| JYA70_RS13385 (JYA70_002676) | - | 2708835..2709137 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| JYA70_RS13390 (JYA70_002677) | - | 2709142..2709402 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| JYA70_RS13395 (JYA70_002678) | - | 2709411..2709674 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| JYA70_RS13400 (JYA70_002679) | - | 2709683..2711626 (+) | 1944 | WP_000700568.1 | AAA family ATPase | - |
| JYA70_RS13405 (JYA70_002680) | - | 2711628..2712548 (+) | 921 | WP_000138481.1 | recombinase RecT | - |
| JYA70_RS13410 (JYA70_002681) | - | 2712629..2713246 (+) | 618 | WP_211044247.1 | MBL fold metallo-hydrolase | - |
| JYA70_RS13415 (JYA70_002682) | ssbA | 2713247..2713717 (+) | 471 | WP_000934761.1 | single-stranded DNA-binding protein | Machinery gene |
| JYA70_RS13420 (JYA70_002683) | - | 2713747..2714631 (+) | 885 | WP_000148300.1 | DnaD domain protein | - |
| JYA70_RS13425 (JYA70_002684) | - | 2714638..2714856 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| JYA70_RS13430 (JYA70_002685) | - | 2714865..2715269 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| JYA70_RS13435 (JYA70_002686) | - | 2715282..2715650 (+) | 369 | WP_000101286.1 | SA1788 family PVL leukocidin-associated protein | - |
| JYA70_RS13440 (JYA70_002687) | - | 2715654..2715896 (+) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| JYA70_RS13445 (JYA70_002688) | - | 2715911..2716159 (+) | 249 | WP_001065094.1 | DUF1024 family protein | - |
| JYA70_RS13450 (JYA70_002689) | - | 2716152..2716688 (+) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| JYA70_RS13455 (JYA70_002690) | - | 2716725..2716970 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| JYA70_RS13460 (JYA70_002691) | - | 2716967..2717173 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| JYA70_RS13465 (JYA70_002692) | - | 2717170..2717556 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| JYA70_RS13470 (JYA70_002693) | - | 2717553..2717702 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| JYA70_RS13475 (JYA70_002694) | - | 2717702..2717902 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| JYA70_RS13480 (JYA70_002695) | - | 2717930..2718346 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| JYA70_RS13485 (JYA70_002696) | - | 2718578..2718877 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17683.60 Da Isoelectric Point: 5.2672
>NTDB_id=542874 JYA70_RS13415 WP_000934761.1 2713247..2713717(+) (ssbA) [Staphylococcus aureus strain CI/BAC/25/13/W]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=542874 JYA70_RS13415 WP_000934761.1 2713247..2713717(+) (ssbA) [Staphylococcus aureus strain CI/BAC/25/13/W]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |