Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JYA66_RS01520 | Genome accession | NZ_CP071100 |
| Coordinates | 351472..351975 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain PS/BAC/169/17/W | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 347409..392372 | 351472..351975 | within | 0 |
Gene organization within MGE regions
Location: 347409..392372
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JYA66_RS01490 (JYA66_000298) | - | 347409..348254 (+) | 846 | WP_001566903.1 | ParB/RepB/Spo0J family partition protein | - |
| JYA66_RS01495 (JYA66_000299) | - | 348411..349292 (+) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| JYA66_RS01500 (JYA66_000300) | - | 349322..349525 (+) | 204 | WP_000157349.1 | DUF951 domain-containing protein | - |
| JYA66_RS01505 (JYA66_000301) | ychF | 349537..350634 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| JYA66_RS01510 (JYA66_000302) | - | 350720..350911 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| JYA66_RS01515 (JYA66_000303) | rpsF | 351155..351451 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| JYA66_RS01520 (JYA66_000304) | ssbA | 351472..351975 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| JYA66_RS01525 (JYA66_000305) | rpsR | 352027..352269 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| JYA66_RS01530 (JYA66_000306) | - | 352502..353221 (-) | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| JYA66_RS01535 (JYA66_000307) | - | 353334..354549 (-) | 1216 | Protein_306 | tyrosine-type recombinase/integrase | - |
| JYA66_RS01540 (JYA66_000308) | - | 354710..355333 (-) | 624 | WP_000230361.1 | helix-turn-helix transcriptional regulator | - |
| JYA66_RS01545 (JYA66_000309) | - | 355482..355646 (+) | 165 | WP_001611932.1 | helix-turn-helix domain-containing protein | - |
| JYA66_RS01550 (JYA66_000310) | - | 355647..355919 (+) | 273 | WP_001138305.1 | helix-turn-helix domain-containing protein | - |
| JYA66_RS01555 (JYA66_000311) | - | 355931..356104 (+) | 174 | WP_000784892.1 | hypothetical protein | - |
| JYA66_RS01560 (JYA66_000312) | - | 356071..356274 (+) | 204 | WP_001231376.1 | hypothetical protein | - |
| JYA66_RS01565 (JYA66_000313) | - | 356276..356659 (+) | 384 | WP_000403837.1 | hypothetical protein | - |
| JYA66_RS01570 (JYA66_000314) | - | 356660..356986 (+) | 327 | WP_001103967.1 | DUF1474 family protein | - |
| JYA66_RS01575 (JYA66_000315) | - | 357051..357920 (+) | 870 | WP_001002709.1 | primase alpha helix C-terminal domain-containing protein | - |
| JYA66_RS01580 (JYA66_000316) | - | 357934..359646 (+) | 1713 | Protein_315 | DUF927 domain-containing protein | - |
| JYA66_RS01585 (JYA66_000317) | - | 359957..360337 (+) | 381 | WP_000356942.1 | hypothetical protein | - |
| JYA66_RS01590 (JYA66_000318) | - | 360334..360975 (+) | 642 | WP_001019762.1 | hypothetical protein | - |
| JYA66_RS01595 (JYA66_000319) | - | 361683..362027 (+) | 345 | WP_001288442.1 | hypothetical protein | - |
| JYA66_RS01600 (JYA66_000320) | - | 362058..362711 (+) | 654 | WP_000214170.1 | hypothetical protein | - |
| JYA66_RS01605 (JYA66_000321) | - | 362764..363291 (+) | 528 | WP_000771361.1 | spore coat protein | - |
| JYA66_RS01610 (JYA66_000322) | - | 363423..363635 (+) | 213 | WP_001656917.1 | hypothetical protein | - |
| JYA66_RS01615 (JYA66_000323) | - | 363632..364201 (+) | 570 | WP_001293071.1 | terminase small subunit | - |
| JYA66_RS13635 | - | 364248..364331 (+) | 84 | Protein_323 | terminase small subunit | - |
| JYA66_RS01620 (JYA66_000324) | - | 364478..365446 (+) | 969 | WP_000801980.1 | Abi family protein | - |
| JYA66_RS01625 (JYA66_000325) | - | 365590..366027 (+) | 438 | WP_073392942.1 | DUF3102 domain-containing protein | - |
| JYA66_RS01630 (JYA66_000326) | - | 366145..366657 (+) | 513 | WP_000813311.1 | hypothetical protein | - |
| JYA66_RS13640 | - | 366673..366852 (+) | 180 | WP_000797954.1 | hypothetical protein | - |
| JYA66_RS01635 (JYA66_000327) | - | 367615..368622 (-) | 1008 | WP_001080636.1 | Abi family protein | - |
| JYA66_RS01640 (JYA66_000328) | - | 368628..369328 (-) | 701 | Protein_329 | site-specific integrase | - |
| JYA66_RS01645 (JYA66_000329) | - | 369565..369933 (+) | 369 | WP_000849169.1 | YxeA family protein | - |
| JYA66_RS01650 (JYA66_000330) | - | 370114..370686 (+) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| JYA66_RS01655 (JYA66_000331) | - | 370824..371087 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| JYA66_RS01660 (JYA66_000332) | - | 371387..371638 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| JYA66_RS01665 (JYA66_000333) | - | 371677..371886 (-) | 210 | WP_000211676.1 | hypothetical protein | - |
| JYA66_RS01670 (JYA66_000334) | - | 372064..372645 (+) | 582 | WP_000158374.1 | histidine phosphatase family protein | - |
| JYA66_RS01675 (JYA66_000335) | - | 372711..373094 (-) | 384 | WP_000868251.1 | hypothetical protein | - |
| JYA66_RS01680 (JYA66_000336) | - | 373349..373975 (-) | 627 | WP_000746687.1 | NDxxF motif lipoprotein | - |
| JYA66_RS01685 (JYA66_000337) | - | 374048..374290 (-) | 243 | Protein_338 | hypothetical protein | - |
| JYA66_RS01690 (JYA66_000338) | ahpF | 374420..375943 (-) | 1524 | WP_000930487.1 | alkyl hydroperoxide reductase subunit F | - |
| JYA66_RS01695 (JYA66_000339) | ahpC | 375959..376528 (-) | 570 | WP_000052781.1 | alkyl hydroperoxide reductase subunit C | - |
| JYA66_RS01700 (JYA66_000340) | nfsA | 377020..377775 (+) | 756 | WP_001289312.1 | oxygen-insensitive NADPH nitroreductase | - |
| JYA66_RS01705 (JYA66_000341) | - | 377855..379243 (-) | 1389 | WP_000991020.1 | L-cystine transporter | - |
| JYA66_RS01710 (JYA66_000342) | - | 379328..379426 (+) | 99 | WP_001792089.1 | hypothetical protein | - |
| JYA66_RS01715 (JYA66_000343) | - | 380142..381098 (-) | 957 | WP_000956136.1 | hypothetical protein | - |
| JYA66_RS01720 (JYA66_000344) | - | 381216..381878 (-) | 663 | WP_000394698.1 | hypothetical protein | - |
| JYA66_RS01725 (JYA66_000345) | - | 382021..382428 (-) | 408 | WP_000763768.1 | general stress protein | - |
| JYA66_RS01730 (JYA66_000346) | xpt | 382941..383519 (+) | 579 | WP_000421410.1 | xanthine phosphoribosyltransferase | - |
| JYA66_RS01735 (JYA66_000347) | pbuX | 383519..384787 (+) | 1269 | WP_000793023.1 | xanthine permease PbuX | - |
| JYA66_RS01740 (JYA66_000348) | guaB | 384825..386291 (+) | 1467 | WP_000264071.1 | IMP dehydrogenase | - |
| JYA66_RS01745 (JYA66_000349) | guaA | 386316..387857 (+) | 1542 | WP_000424963.1 | glutamine-hydrolyzing GMP synthase | - |
| JYA66_RS01750 (JYA66_000350) | - | 387970..388506 (-) | 537 | WP_000551776.1 | hypothetical protein | - |
| JYA66_RS01755 (JYA66_000351) | - | 388875..389603 (-) | 729 | WP_211020267.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| JYA66_RS13645 | - | 390115..390228 (+) | 114 | Protein_353 | pathogenicity island protein | - |
| JYA66_RS13650 | - | 390281..390684 (+) | 404 | Protein_354 | mobile element-associated protein | - |
| JYA66_RS01760 (JYA66_000352) | - | 390753..391076 (-) | 324 | WP_211020269.1 | transposase | - |
| JYA66_RS01765 (JYA66_000353) | - | 391337..391489 (-) | 153 | WP_000248850.1 | hypothetical protein | - |
| JYA66_RS01770 (JYA66_000354) | - | 392013..392372 (-) | 360 | WP_001021621.1 | DUF1304 domain-containing protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=542795 JYA66_RS01520 WP_000934799.1 351472..351975(+) (ssbA) [Staphylococcus aureus strain PS/BAC/169/17/W]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=542795 JYA66_RS01520 WP_000934799.1 351472..351975(+) (ssbA) [Staphylococcus aureus strain PS/BAC/169/17/W]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |