Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JY500_RS20495 Genome accession   NZ_CP071060
Coordinates   4520645..4521169 (-) Length   174 a.a.
NCBI ID   WP_172202429.1    Uniprot ID   -
Organism   Niveibacterium microcysteis strain HC41     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4515645..4526169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY500_RS20465 (JY500_20465) - 4515761..4516150 (-) 390 WP_172202435.1 NusG domain II-containing protein -
  JY500_RS20470 (JY500_20470) rapZ 4516166..4517008 (-) 843 WP_172202434.1 RNase adapter RapZ -
  JY500_RS20475 (JY500_20475) - 4517164..4518753 (+) 1590 WP_206254407.1 response regulator -
  JY500_RS20480 (JY500_20480) - 4518885..4519112 (+) 228 WP_172202432.1 hypothetical protein -
  JY500_RS20485 (JY500_20485) - 4519216..4519515 (+) 300 WP_281391266.1 HU family DNA-binding protein -
  JY500_RS20490 (JY500_20490) - 4519886..4520539 (+) 654 WP_172202430.1 PEP-CTERM sorting domain-containing protein -
  JY500_RS20495 (JY500_20495) ssb 4520645..4521169 (-) 525 WP_172202429.1 single-stranded DNA-binding protein Machinery gene
  JY500_RS20500 (JY500_20500) - 4521169..4522536 (-) 1368 WP_246479706.1 MFS transporter -
  JY500_RS20505 (JY500_20505) - 4522615..4523217 (+) 603 WP_206254408.1 transglutaminase family protein -
  JY500_RS20510 (JY500_20510) uvrA 4523255..4526071 (+) 2817 WP_172202427.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18634.46 Da        Isoelectric Point: 6.9846

>NTDB_id=542598 JY500_RS20495 WP_172202429.1 4520645..4521169(-) (ssb) [Niveibacterium microcysteis strain HC41]
MASVNKVILVGNLGADPETRYAPSGDAICNIRIATTDTWRDKATGEKKEATEWHRVVFFGKVAEIAGQYLKKGSSVYIEG
RLQTRKWQDKEGRDQYTTEIRADQMQMLGGRPGGEGGGSRGGYNSGGDDYNQAPAPRGGNQGGGNARPQSRPAPAPQAPA
GGNNFGDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=542598 JY500_RS20495 WP_172202429.1 4520645..4521169(-) (ssb) [Niveibacterium microcysteis strain HC41]
ATGGCTTCTGTGAACAAGGTGATCCTCGTCGGTAACCTCGGTGCCGACCCGGAGACCCGCTACGCCCCGAGCGGCGACGC
GATCTGCAATATCCGTATCGCGACCACCGACACCTGGCGCGACAAGGCCACCGGCGAGAAGAAGGAAGCGACCGAATGGC
ACCGCGTTGTGTTCTTCGGCAAGGTCGCGGAAATCGCCGGCCAGTACCTGAAGAAGGGCTCGTCGGTCTATATCGAAGGC
CGCCTGCAGACCCGCAAGTGGCAGGACAAGGAAGGTCGTGACCAGTACACGACCGAGATCCGCGCCGACCAGATGCAGAT
GCTCGGCGGCCGCCCCGGTGGTGAGGGCGGCGGCTCGCGCGGCGGCTACAACAGCGGCGGCGACGACTACAACCAGGCAC
CGGCTCCGCGCGGCGGCAATCAGGGCGGCGGCAATGCACGCCCGCAATCGCGCCCGGCCCCGGCGCCACAGGCCCCGGCC
GGCGGAAACAACTTCGGCGATTTCGACGACGACATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.497

100

0.592
  ssb Vibrio cholerae strain A1552

54.396

100

0.569
  ssb Neisseria meningitidis MC58

46.857

100

0.471
  ssb Neisseria gonorrhoeae MS11

46.857

100

0.471