Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   JY500_RS20420 Genome accession   NZ_CP071060
Coordinates   4507930..4508286 (-) Length   118 a.a.
NCBI ID   WP_172202666.1    Uniprot ID   -
Organism   Niveibacterium microcysteis strain HC41     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4502930..4513286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY500_RS20405 (JY500_20405) - 4504782..4506935 (-) 2154 WP_172202446.1 methyl-accepting chemotaxis protein -
  JY500_RS20410 (JY500_20410) - 4507000..4507521 (-) 522 WP_172202445.1 chemotaxis protein CheW -
  JY500_RS20415 (JY500_20415) - 4507538..4507903 (-) 366 WP_172202444.1 response regulator -
  JY500_RS20420 (JY500_20420) pilG 4507930..4508286 (-) 357 WP_172202666.1 response regulator Regulator
  JY500_RS20425 (JY500_20425) - 4508448..4508600 (-) 153 WP_206256560.1 rubredoxin -
  JY500_RS20430 (JY500_20430) - 4508705..4509529 (+) 825 WP_206254401.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  JY500_RS20435 (JY500_20435) thiE 4509526..4510149 (+) 624 WP_206254402.1 thiamine phosphate synthase -
  JY500_RS20440 (JY500_20440) hemL 4510221..4511504 (+) 1284 WP_206254403.1 glutamate-1-semialdehyde 2,1-aminomutase -
  JY500_RS20445 (JY500_20445) - 4511605..4512828 (+) 1224 WP_206254404.1 MFS transporter -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12904.96 Da        Isoelectric Point: 7.9094

>NTDB_id=542597 JY500_RS20420 WP_172202666.1 4507930..4508286(-) (pilG) [Niveibacterium microcysteis strain HC41]
MVIDDSNTIRRSAEIFLAQAGCHVLLAEDGFDALAKIADHHPDIVFVDIMMPRLDGYQTCALIKKNPKFSGTPVIMLSSK
DGLFDRARGRMVGSNEYLTKPFTKDSLLKAVAAHAGRA

Nucleotide


Download         Length: 357 bp        

>NTDB_id=542597 JY500_RS20420 WP_172202666.1 4507930..4508286(-) (pilG) [Niveibacterium microcysteis strain HC41]
ATGGTCATCGACGACTCGAACACCATCCGGCGCAGCGCAGAGATCTTCCTCGCCCAAGCCGGCTGTCACGTGCTGCTCGC
CGAAGACGGCTTTGATGCCCTGGCGAAGATCGCCGACCATCATCCCGACATCGTCTTTGTTGACATCATGATGCCGCGGC
TCGATGGCTATCAGACCTGCGCGCTGATCAAGAAGAACCCCAAGTTTTCCGGTACCCCGGTGATCATGCTGTCGTCCAAG
GACGGTCTGTTTGACCGTGCGCGTGGCCGCATGGTCGGGTCCAACGAGTATTTAACGAAACCCTTTACCAAGGACAGCCT
GCTCAAGGCGGTAGCCGCACACGCCGGCCGCGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

68.966

98.305

0.678
  vicR Streptococcus mutans UA159

38.136

100

0.381
  pilH Synechocystis sp. PCC 6803

39.64

94.068

0.373
  chiS Vibrio cholerae strain A1552

37.719

96.61

0.364