Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JW792_RS06875 Genome accession   NZ_CP071057
Coordinates   1378135..1378608 (-) Length   157 a.a.
NCBI ID   WP_135996434.1    Uniprot ID   A0A4S2H010
Organism   Marinicauda algicola strain RMAR8-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1373135..1383608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW792_RS06850 purS 1373297..1373539 (+) 243 WP_135996439.1 phosphoribosylformylglycinamidine synthase subunit PurS -
  JW792_RS06855 purQ 1373560..1374225 (+) 666 WP_135996438.1 phosphoribosylformylglycinamidine synthase subunit PurQ -
  JW792_RS06860 purL 1374222..1376456 (+) 2235 WP_135996437.1 phosphoribosylformylglycinamidine synthase subunit PurL -
  JW792_RS06865 - 1376575..1377045 (-) 471 WP_135996436.1 hypothetical protein -
  JW792_RS06870 - 1377234..1378055 (-) 822 WP_158291626.1 penicillin-binding transpeptidase domain-containing protein -
  JW792_RS06875 ssb 1378135..1378608 (-) 474 WP_135996434.1 single-stranded DNA-binding protein Machinery gene
  JW792_RS06880 uvrA 1378823..1381702 (+) 2880 WP_135996433.1 excinuclease ABC subunit UvrA -
  JW792_RS06885 - 1381727..1382347 (-) 621 WP_135996432.1 exopolysaccharide biosynthesis protein -
  JW792_RS06890 - 1382386..1383354 (-) 969 WP_135996431.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17737.62 Da        Isoelectric Point: 5.0866

>NTDB_id=542573 JW792_RS06875 WP_135996434.1 1378135..1378608(-) (ssb) [Marinicauda algicola strain RMAR8-3]
MAGSVNKVILIGNLGADPEIRRLPSGDPVVNMRLATSEQWRDRQTGERREKTEWHNVVIFNDNLAKVAENYLKKGSKVYI
EGQLQTRKWTDQSGQDRYTTEVVLQKFRGELTMLDGRGEGGGRSGGYAMEDQSSGGQRQERPREDFSSDTLDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=542573 JW792_RS06875 WP_135996434.1 1378135..1378608(-) (ssb) [Marinicauda algicola strain RMAR8-3]
ATGGCCGGAAGCGTCAACAAGGTAATCCTCATCGGCAATCTCGGCGCGGACCCGGAAATCCGCCGCCTGCCCTCGGGCGA
TCCGGTGGTCAACATGCGCCTCGCCACCAGCGAGCAGTGGCGCGACCGCCAGACCGGGGAACGCCGCGAGAAGACCGAGT
GGCACAATGTCGTGATCTTCAACGACAACCTCGCCAAGGTCGCCGAGAACTATCTCAAGAAGGGCTCCAAGGTTTACATC
GAGGGCCAGCTGCAGACGCGCAAATGGACCGACCAGAGCGGGCAGGACCGCTACACGACCGAGGTCGTGCTGCAGAAATT
CCGCGGCGAGCTGACCATGCTCGACGGCCGCGGCGAGGGCGGCGGACGCTCCGGCGGCTATGCGATGGAGGACCAGTCCT
CCGGCGGCCAGCGCCAGGAGCGCCCGCGCGAGGACTTCTCCTCCGACACGCTGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4S2H010

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.601

100

0.58
  ssb Glaesserella parasuis strain SC1401

47.059

100

0.561
  ssb Neisseria meningitidis MC58

39.106

100

0.446
  ssb Neisseria gonorrhoeae MS11

39.106

100

0.446