Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JYG36_RS03640 Genome accession   NZ_CP071007
Coordinates   771854..772366 (+) Length   170 a.a.
NCBI ID   WP_045200019.1    Uniprot ID   A0A1H1A2L1
Organism   Pseudomonas sp. SORT22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 766854..777366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG36_RS03625 (JYG36_03625) bfr 766961..767425 (+) 465 WP_045200027.1 bacterioferritin -
  JYG36_RS03630 (JYG36_03630) uvrA 767486..770320 (-) 2835 WP_213603122.1 excinuclease ABC subunit UvrA -
  JYG36_RS03635 (JYG36_03635) - 770450..771844 (+) 1395 WP_045200021.1 MFS transporter -
  JYG36_RS03640 (JYG36_03640) ssb 771854..772366 (+) 513 WP_045200019.1 single-stranded DNA-binding protein Machinery gene
  JYG36_RS03645 (JYG36_03645) fdnG 772574..775639 (+) 3066 WP_213603124.1 formate dehydrogenase-N subunit alpha -
  JYG36_RS03650 (JYG36_03650) fdxH 775639..776589 (+) 951 WP_045200013.1 formate dehydrogenase subunit beta -
  JYG36_RS03655 (JYG36_03655) - 776586..777239 (+) 654 WP_045200010.1 formate dehydrogenase subunit gamma -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18940.06 Da        Isoelectric Point: 5.9314

>NTDB_id=542166 JYG36_RS03640 WP_045200019.1 771854..772366(+) (ssb) [Pseudomonas sp. SORT22]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQNQDGAPQGGNNYNQAPRQQAPRPQQSAPQQRPAPQQAAPQPAPD
FDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=542166 JYG36_RS03640 WP_045200019.1 771854..772366(+) (ssb) [Pseudomonas sp. SORT22]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGCGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGCGCACCGAAT
GGCACCGCGTATCGATGTTCGGCAAAGTTGCCGAAATCGCCGGTGAATACCTGCGCAAAGGCTCGCAAGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACCGAAATCGTTGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGCGGCCGCCCGCAGAACCAGGACGGCGCCCCGCAAGGCGGCAACAATTACAACCAGGCGCCACGCC
AACAGGCTCCGCGTCCACAGCAGTCCGCGCCGCAACAGCGCCCGGCGCCTCAGCAGGCCGCACCGCAGCCGGCTCCGGAC
TTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H1A2L1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.889

100

0.624
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.529
  ssb Neisseria meningitidis MC58

50.282

100

0.524
  ssb Neisseria gonorrhoeae MS11

50.282

100

0.524