Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JYB86_RS14170 Genome accession   NZ_CP070997
Coordinates   2998376..2998945 (-) Length   189 a.a.
NCBI ID   WP_205779200.1    Uniprot ID   -
Organism   Acinetobacter indicus strain LYS68A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2993376..3003945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB86_RS14140 (JYB86_14140) - 2994265..2994486 (-) 222 WP_005180724.1 hypothetical protein -
  JYB86_RS14145 (JYB86_14145) - 2994510..2994770 (-) 261 Protein_2740 copper resistance protein B -
  JYB86_RS14150 (JYB86_14150) - 2994823..2995527 (-) 705 WP_205779199.1 IS6-like element IS1006 family transposase -
  JYB86_RS14155 (JYB86_14155) cadR 2995621..2996013 (-) 393 WP_000550240.1 Cd(II)/Pb(II)-responsive transcriptional regulator -
  JYB86_RS14160 (JYB86_14160) - 2996103..2997383 (+) 1281 WP_005237495.1 cation transporter -
  JYB86_RS14165 (JYB86_14165) - 2997447..2998151 (+) 705 WP_001067784.1 IS6-like element IS1006 family transposase -
  JYB86_RS14170 (JYB86_14170) ssb 2998376..2998945 (-) 570 WP_205779200.1 single-stranded DNA-binding protein Machinery gene
  JYB86_RS14175 (JYB86_14175) - 2998997..3000361 (-) 1365 WP_075167305.1 MFS transporter -
  JYB86_RS14180 (JYB86_14180) - 3000514..3001596 (-) 1083 WP_005180731.1 DUF475 domain-containing protein -
  JYB86_RS14185 (JYB86_14185) tenA 3001864..3002541 (+) 678 WP_205779201.1 thiaminase II -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20768.52 Da        Isoelectric Point: 6.4819

>NTDB_id=542105 JYB86_RS14170 WP_205779200.1 2998376..2998945(-) (ssb) [Acinetobacter indicus strain LYS68A]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGEQGDNGFSQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=542105 JYB86_RS14170 WP_205779200.1 2998376..2998945(-) (ssb) [Acinetobacter indicus strain LYS68A]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCTATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCATTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTGGTCGTCAGCAAGGTGAGCAGGGCGATAATGGTTTTAGCCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAAGCTCAAGGTGGTTTTAACAACAATAATGCTGGTGGTGGCTAT
GGCAACCAGGGCGGTTATCAGCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCGGCAGATTTGGATGATGACTT
ACCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.795

100

0.534
  ssb Vibrio cholerae strain A1552

43.434

100

0.455
  ssb Neisseria meningitidis MC58

38.743

100

0.392
  ssb Neisseria gonorrhoeae MS11

38.095

100

0.381