Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JYB86_RS14170 Genome accession   NZ_CP070997
Coordinates   2998376..2998945 (-) Length   189 a.a.
NCBI ID   WP_205779200.1    Uniprot ID   -
Organism   Acinetobacter indicus strain LYS68A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2951166..2998945 2998376..2998945 within 0
IScluster/Tn 2993108..2998151 2998376..2998945 flank 225


Gene organization within MGE regions


Location: 2951166..2998945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB86_RS13915 (JYB86_13915) - 2951166..2951408 (+) 243 Protein_2695 Arm DNA-binding domain-containing protein -
  JYB86_RS13920 (JYB86_13920) - 2951459..2952677 (+) 1219 Protein_2696 IS3 family transposase -
  JYB86_RS13925 (JYB86_13925) istA 2952717..2953429 (-) 713 Protein_2697 IS21 family transposase -
  JYB86_RS13930 (JYB86_13930) - 2953519..2953866 (-) 348 Protein_2698 transposase -
  JYB86_RS13935 (JYB86_13935) - 2954113..2954970 (+) 858 WP_104500261.1 DNA adenine methylase -
  JYB86_RS13940 (JYB86_13940) - 2954991..2956598 (-) 1608 WP_205779189.1 hypothetical protein -
  JYB86_RS13945 (JYB86_13945) - 2956602..2958887 (-) 2286 WP_205779190.1 ATP-binding protein -
  JYB86_RS13950 (JYB86_13950) - 2959910..2960137 (+) 228 WP_005180651.1 hypothetical protein -
  JYB86_RS13960 (JYB86_13960) - 2960498..2961322 (-) 825 WP_160232261.1 SAM-dependent methyltransferase -
  JYB86_RS13965 (JYB86_13965) - 2961326..2962624 (-) 1299 WP_034598019.1 FAD-dependent oxidoreductase -
  JYB86_RS13970 (JYB86_13970) - 2963058..2963933 (-) 876 WP_205779191.1 pirin family protein -
  JYB86_RS13975 (JYB86_13975) ahpC 2964135..2964698 (-) 564 WP_005180661.1 alkyl hydroperoxide reductase subunit C -
  JYB86_RS13985 (JYB86_13985) - 2966300..2967625 (-) 1326 WP_127801714.1 ISNCY family transposase -
  JYB86_RS13990 (JYB86_13990) - 2968018..2968347 (+) 330 WP_004641881.1 four-helix bundle copper-binding protein -
  JYB86_RS13995 (JYB86_13995) - 2968476..2968769 (-) 294 Protein_2710 type II toxin-antitoxin system RelE family toxin -
  JYB86_RS14000 (JYB86_14000) - 2968759..2969004 (-) 246 WP_104988060.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  JYB86_RS14005 (JYB86_14005) - 2969114..2969371 (-) 258 Protein_2712 ISNCY family transposase -
  JYB86_RS14010 (JYB86_14010) tnpA 2969448..2969831 (+) 384 WP_205778995.1 IS66-like element accessory protein TnpA -
  JYB86_RS14015 (JYB86_14015) tnpB 2969828..2970163 (+) 336 WP_002034689.1 IS66 family insertion sequence element accessory protein TnpB -
  JYB86_RS14020 (JYB86_14020) tnpC 2970238..2971842 (+) 1605 WP_205778994.1 IS66 family transposase -
  JYB86_RS14025 (JYB86_14025) - 2971874..2972959 (-) 1086 Protein_2716 ISNCY family transposase -
  JYB86_RS14030 (JYB86_14030) - 2973191..2974135 (-) 945 WP_168397138.1 copper resistance protein B -
  JYB86_RS14035 (JYB86_14035) - 2974122..2974460 (-) 339 WP_004897649.1 hypothetical protein -
  JYB86_RS14040 (JYB86_14040) - 2974447..2976258 (-) 1812 WP_004733211.1 copper resistance system multicopper oxidase -
  JYB86_RS14045 (JYB86_14045) - 2976956..2978281 (+) 1326 WP_127801714.1 ISNCY family transposase -
  JYB86_RS14050 (JYB86_14050) - 2978358..2978672 (-) 315 WP_205779192.1 BrnA antitoxin family protein -
  JYB86_RS14055 (JYB86_14055) - 2978659..2978946 (-) 288 WP_205779193.1 BrnT family toxin -
  JYB86_RS14060 (JYB86_14060) - 2979176..2979874 (-) 699 WP_205779194.1 hypothetical protein -
  JYB86_RS14065 (JYB86_14065) - 2979963..2980286 (+) 324 WP_205779195.1 hypothetical protein -
  JYB86_RS14070 (JYB86_14070) - 2980289..2981065 (+) 777 WP_205779196.1 hypothetical protein -
  JYB86_RS14075 (JYB86_14075) - 2981151..2981627 (+) 477 WP_205779197.1 hypothetical protein -
  JYB86_RS14080 (JYB86_14080) - 2981702..2981995 (-) 294 WP_000221358.1 type II toxin-antitoxin system RelE family toxin -
  JYB86_RS14085 (JYB86_14085) - 2981985..2982230 (-) 246 WP_000246756.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  JYB86_RS14090 (JYB86_14090) - 2982340..2983665 (-) 1326 WP_127801714.1 ISNCY family transposase -
  JYB86_RS14095 (JYB86_14095) - 2984017..2984151 (-) 135 Protein_2730 IS982 family transposase -
  JYB86_RS14100 (JYB86_14100) - 2984329..2984676 (+) 348 WP_205779198.1 hypothetical protein -
  JYB86_RS14105 (JYB86_14105) - 2984931..2985497 (-) 567 WP_000678311.1 recombinase family protein -
  JYB86_RS14110 (JYB86_14110) - 2985684..2986583 (-) 900 WP_177156119.1 cation diffusion facilitator family transporter -
  JYB86_RS14115 (JYB86_14115) - 2986670..2989810 (-) 3141 WP_096902762.1 efflux RND transporter permease subunit -
  JYB86_RS14120 (JYB86_14120) - 2989800..2991029 (-) 1230 WP_104472702.1 efflux RND transporter periplasmic adaptor subunit -
  JYB86_RS14125 (JYB86_14125) - 2991031..2992356 (-) 1326 WP_035269736.1 TolC family protein -
  JYB86_RS14130 (JYB86_14130) - 2992405..2992773 (-) 369 WP_005096107.1 cation efflux protein, CzcI-like -
  JYB86_RS14135 (JYB86_14135) - 2993108..2994198 (-) 1091 Protein_2738 IS3 family transposase -
  JYB86_RS14140 (JYB86_14140) - 2994265..2994486 (-) 222 WP_005180724.1 hypothetical protein -
  JYB86_RS14145 (JYB86_14145) - 2994510..2994770 (-) 261 Protein_2740 copper resistance protein B -
  JYB86_RS14150 (JYB86_14150) - 2994823..2995527 (-) 705 WP_205779199.1 IS6-like element IS1006 family transposase -
  JYB86_RS14155 (JYB86_14155) cadR 2995621..2996013 (-) 393 WP_000550240.1 Cd(II)/Pb(II)-responsive transcriptional regulator -
  JYB86_RS14160 (JYB86_14160) - 2996103..2997383 (+) 1281 WP_005237495.1 cation transporter -
  JYB86_RS14165 (JYB86_14165) - 2997447..2998151 (+) 705 WP_001067784.1 IS6-like element IS1006 family transposase -
  JYB86_RS14170 (JYB86_14170) ssb 2998376..2998945 (-) 570 WP_205779200.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20768.52 Da        Isoelectric Point: 6.4819

>NTDB_id=542105 JYB86_RS14170 WP_205779200.1 2998376..2998945(-) (ssb) [Acinetobacter indicus strain LYS68A]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGEQGDNGFSQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=542105 JYB86_RS14170 WP_205779200.1 2998376..2998945(-) (ssb) [Acinetobacter indicus strain LYS68A]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCTATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCATTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTGGTCGTCAGCAAGGTGAGCAGGGCGATAATGGTTTTAGCCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAAGCTCAAGGTGGTTTTAACAACAATAATGCTGGTGGTGGCTAT
GGCAACCAGGGCGGTTATCAGCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCGGCAGATTTGGATGATGACTT
ACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.795

100

0.534
  ssb Vibrio cholerae strain A1552

43.434

100

0.455
  ssb Neisseria meningitidis MC58

38.743

100

0.392
  ssb Neisseria gonorrhoeae MS11

38.095

100

0.381