NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	JYA46_RS08365	Genome accession	NZ_CP070991
Coordinates	1643629..1644132 (-)	Length	167 a.a.
NCBI ID	WP_000934799.1	Uniprot ID	A0A7U7IE99
Organism	Staphylococcus aureus strain CBS2016-05
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1638629..1649132

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JYA46_RS08320 (JYA46_001664)	-	1638846..1639055 (-)	210	WP_001058490.1	hypothetical protein	-
JYA46_RS08325 (JYA46_001665)	-	1639048..1639194 (-)	147	WP_000784873.1	hypothetical protein	-
JYA46_RS08330 (JYA46_001666)	-	1639206..1639478 (-)	273	WP_001138301.1	helix-turn-helix domain-containing protein	-
JYA46_RS08335 (JYA46_001667)	-	1639479..1639691 (-)	213	WP_033863184.1	helix-turn-helix transcriptional regulator	-
JYA46_RS08340 (JYA46_001668)	-	1639730..1639930 (-)	201	WP_001033058.1	helix-turn-helix domain-containing protein	-
JYA46_RS08345 (JYA46_001669)	-	1640037..1640960 (+)	924	WP_050436923.1	helix-turn-helix transcriptional regulator	-
JYA46_RS08350 (JYA46_001670)	-	1640986..1642195 (+)	1210	Protein_1610	tyrosine-type recombinase/integrase	-
JYA46_RS08355 (JYA46_001671)	-	1642197..1643096 (+)	900	WP_001797289.1	Abi family protein	-
JYA46_RS08360 (JYA46_001672)	rpsR	1643335..1643577 (-)	243	WP_000897044.1	30S ribosomal protein S18	-
JYA46_RS08365 (JYA46_001673)	ssbA	1643629..1644132 (-)	504	WP_000934799.1	single-stranded DNA-binding protein	Machinery gene
JYA46_RS08370 (JYA46_001674)	rpsF	1644153..1644449 (-)	297	WP_001261460.1	30S ribosomal protein S6	-
JYA46_RS08375 (JYA46_001675)	-	1644693..1644884 (+)	192	WP_001052483.1	hypothetical protein	-
JYA46_RS08380 (JYA46_001676)	ychF	1644970..1646067 (-)	1098	WP_001218732.1	redox-regulated ATPase YchF	-
JYA46_RS08385 (JYA46_001677)	-	1646079..1646282 (-)	204	WP_000157348.1	DUF951 domain-containing protein	-
JYA46_RS08390 (JYA46_001678)	-	1646312..1647193 (-)	882	WP_000373075.1	mechanosensitive ion channel family protein	-
JYA46_RS08395 (JYA46_001679)	-	1647347..1648192 (-)	846	WP_072490958.1	ParB/RepB/Spo0J family partition protein	-

Sequence

Protein

Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305

                                >NTDB_id=541986 JYA46_RS08365 WP_000934799.1 1643629..1644132(-) (ssbA) [Staphylococcus aureus strain CBS2016-05]

MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR

NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI

SDDDLPF

Nucleotide

Download Length: 504 bp

                                >NTDB_id=541986 JYA46_RS08365 WP_000934799.1 1643629..1644132(-) (ssbA) [Staphylococcus aureus strain CBS2016-05]

ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC

GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT

TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT

AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA

TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC

AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA

AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	65.341	100	0.689
ssb	Latilactobacillus sakei subsp. sakei 23K	54.971	100	0.563
ssbB	Bacillus subtilis subsp. subtilis str. 168	58.491	63.473	0.371
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.365

Detailed information NTG0541986