Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JYA46_RS08365 | Genome accession | NZ_CP070991 |
| Coordinates | 1643629..1644132 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain CBS2016-05 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1623467..1648192 | 1643629..1644132 | within | 0 |
Gene organization within MGE regions
Location: 1623467..1648192
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JYA46_RS08215 (JYA46_001643) | - | 1623467..1623721 (-) | 255 | WP_000466742.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| JYA46_RS08220 (JYA46_001644) | - | 1624015..1624278 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| JYA46_RS08225 (JYA46_001645) | - | 1624416..1624988 (-) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| JYA46_RS08230 (JYA46_001646) | - | 1625169..1625468 (-) | 300 | Protein_1586 | YxeA family protein | - |
| JYA46_RS08235 (JYA46_001647) | selX | 1625846..1626457 (-) | 612 | WP_072490954.1 | staphylococcal enterotoxin-like toxin X | - |
| JYA46_RS08240 (JYA46_001648) | - | 1626657..1627357 (+) | 701 | Protein_1588 | tyrosine-type recombinase/integrase | - |
| JYA46_RS08245 (JYA46_001649) | - | 1627408..1628346 (+) | 939 | WP_072491317.1 | Abi family protein | - |
| JYA46_RS08250 (JYA46_001650) | - | 1629409..1629636 (-) | 228 | WP_033863179.1 | hypothetical protein | - |
| JYA46_RS14120 | - | 1629873..1630265 (-) | 393 | WP_017431599.1 | hypothetical protein | - |
| JYA46_RS08260 (JYA46_001652) | - | 1630638..1631066 (-) | 429 | WP_000591858.1 | hypothetical protein | - |
| JYA46_RS08265 (JYA46_001653) | - | 1631063..1631581 (-) | 519 | WP_000624990.1 | hypothetical protein | - |
| JYA46_RS08270 (JYA46_001654) | - | 1632010..1632579 (-) | 570 | WP_001293066.1 | terminase small subunit | - |
| JYA46_RS08275 (JYA46_001655) | - | 1632576..1632788 (-) | 213 | WP_025174984.1 | hypothetical protein | - |
| JYA46_RS08280 (JYA46_001656) | - | 1632920..1633447 (-) | 528 | WP_000771364.1 | spore coat protein | - |
| JYA46_RS08285 (JYA46_001657) | - | 1633500..1634153 (-) | 654 | WP_000214171.1 | hypothetical protein | - |
| JYA46_RS08290 (JYA46_001658) | - | 1634184..1634525 (-) | 342 | WP_001190614.1 | hypothetical protein | - |
| JYA46_RS08295 (JYA46_001659) | - | 1634974..1635615 (-) | 642 | WP_072490956.1 | pathogenicity island protein | - |
| JYA46_RS08300 (JYA46_001660) | - | 1635617..1635889 (-) | 273 | WP_001149387.1 | hypothetical protein | - |
| JYA46_RS08305 (JYA46_001661) | - | 1635876..1636679 (-) | 804 | WP_033863177.1 | bifunctional DNA primase/polymerase | - |
| JYA46_RS08310 (JYA46_001662) | - | 1636850..1638463 (-) | 1614 | WP_106875302.1 | phage resistance protein | - |
| JYA46_RS08315 (JYA46_001663) | - | 1638538..1638843 (-) | 306 | WP_033863183.1 | DUF1474 family protein | - |
| JYA46_RS08320 (JYA46_001664) | - | 1638846..1639055 (-) | 210 | WP_001058490.1 | hypothetical protein | - |
| JYA46_RS08325 (JYA46_001665) | - | 1639048..1639194 (-) | 147 | WP_000784873.1 | hypothetical protein | - |
| JYA46_RS08330 (JYA46_001666) | - | 1639206..1639478 (-) | 273 | WP_001138301.1 | helix-turn-helix domain-containing protein | - |
| JYA46_RS08335 (JYA46_001667) | - | 1639479..1639691 (-) | 213 | WP_033863184.1 | helix-turn-helix transcriptional regulator | - |
| JYA46_RS08340 (JYA46_001668) | - | 1639730..1639930 (-) | 201 | WP_001033058.1 | helix-turn-helix domain-containing protein | - |
| JYA46_RS08345 (JYA46_001669) | - | 1640037..1640960 (+) | 924 | WP_050436923.1 | helix-turn-helix transcriptional regulator | - |
| JYA46_RS08350 (JYA46_001670) | - | 1640986..1642195 (+) | 1210 | Protein_1610 | tyrosine-type recombinase/integrase | - |
| JYA46_RS08355 (JYA46_001671) | - | 1642197..1643096 (+) | 900 | WP_001797289.1 | Abi family protein | - |
| JYA46_RS08360 (JYA46_001672) | rpsR | 1643335..1643577 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| JYA46_RS08365 (JYA46_001673) | ssbA | 1643629..1644132 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| JYA46_RS08370 (JYA46_001674) | rpsF | 1644153..1644449 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| JYA46_RS08375 (JYA46_001675) | - | 1644693..1644884 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| JYA46_RS08380 (JYA46_001676) | ychF | 1644970..1646067 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| JYA46_RS08385 (JYA46_001677) | - | 1646079..1646282 (-) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| JYA46_RS08390 (JYA46_001678) | - | 1646312..1647193 (-) | 882 | WP_000373075.1 | mechanosensitive ion channel family protein | - |
| JYA46_RS08395 (JYA46_001679) | - | 1647347..1648192 (-) | 846 | WP_072490958.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=541986 JYA46_RS08365 WP_000934799.1 1643629..1644132(-) (ssbA) [Staphylococcus aureus strain CBS2016-05]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=541986 JYA46_RS08365 WP_000934799.1 1643629..1644132(-) (ssbA) [Staphylococcus aureus strain CBS2016-05]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |