Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JYG34_RS02435 Genome accession   NZ_CP070982
Coordinates   542733..543275 (+) Length   180 a.a.
NCBI ID   WP_011531903.1    Uniprot ID   Q1IFT5
Organism   Pseudomonas entomophila strain Small     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 537733..548275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG34_RS02420 (JYG34_02420) bfr 537775..538239 (+) 465 WP_166891780.1 bacterioferritin -
  JYG34_RS02425 (JYG34_02425) uvrA 538365..541199 (-) 2835 WP_213659333.1 excinuclease ABC subunit UvrA -
  JYG34_RS02430 (JYG34_02430) - 541329..542723 (+) 1395 WP_213659334.1 MFS transporter -
  JYG34_RS02435 (JYG34_02435) ssb 542733..543275 (+) 543 WP_011531903.1 single-stranded DNA-binding protein Machinery gene
  JYG34_RS26415 - 543476..543610 (-) 135 WP_283811796.1 hypothetical protein -
  JYG34_RS02440 (JYG34_02440) tssA 543815..545371 (+) 1557 WP_213659335.1 type VI secretion system protein TssA -
  JYG34_RS02445 (JYG34_02445) tssB 545405..545905 (+) 501 WP_213659336.1 type VI secretion system contractile sheath small subunit -
  JYG34_RS02450 (JYG34_02450) tssC 545933..547405 (+) 1473 WP_011531906.1 type VI secretion system contractile sheath large subunit -
  JYG34_RS02455 (JYG34_02455) tssE 547415..547831 (+) 417 WP_011531907.1 type VI secretion system baseplate subunit TssE -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20073.19 Da        Isoelectric Point: 5.9312

>NTDB_id=541843 JYG34_RS02435 WP_011531903.1 542733..543275(+) (ssb) [Pseudomonas entomophila strain Small]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQQQGGDPYNQGGGNYNQGGQQQYNQAPRQQAPRPQQAPQRPAP
QQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=541843 JYG34_RS02435 WP_011531903.1 542733..543275(+) (ssb) [Pseudomonas entomophila strain Small]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGCGGTCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGTCCGGGCAGAAGGTCGAGCGTACTGAAT
GGCACCGCGTGTCGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGAACCAGCAGCAAGGTGGCGACCCGTACAACCAGGGTGGCGGCAATTACAACC
AGGGCGGGCAGCAGCAGTACAACCAGGCGCCGCGTCAGCAGGCACCGCGCCCGCAGCAGGCTCCTCAGCGTCCGGCGCCA
CAGCAGCCGGCCCCGCAGCCGGCCGCCGACTTCGACAGCTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1IFT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.578
  ssb Glaesserella parasuis strain SC1401

50

100

0.528
  ssb Neisseria gonorrhoeae MS11

50.829

100

0.511
  ssb Neisseria meningitidis MC58

50

100

0.5