Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JYG38_RS23325 Genome accession   NZ_CP070981
Coordinates   5196658..5197173 (-) Length   171 a.a.
NCBI ID   WP_017849542.1    Uniprot ID   A0A6I3WGC1
Organism   Pseudomonas rhodesiae strain DLA23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5191658..5202173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG38_RS23300 (JYG38_23300) - 5192083..5192838 (-) 756 WP_034100986.1 alpha/beta fold hydrolase -
  JYG38_RS23305 (JYG38_23305) - 5192828..5193937 (-) 1110 WP_213632567.1 DUF3182 family protein -
  JYG38_RS23310 (JYG38_23310) - 5194109..5195080 (-) 972 WP_034139478.1 GlxA family transcriptional regulator -
  JYG38_RS23315 (JYG38_23315) - 5195177..5195740 (+) 564 WP_167418229.1 cysteine hydrolase family protein -
  JYG38_RS23320 (JYG38_23320) tam 5195762..5196523 (-) 762 WP_034139480.1 trans-aconitate 2-methyltransferase -
  JYG38_RS23325 (JYG38_23325) ssb 5196658..5197173 (-) 516 WP_017849542.1 single-stranded DNA-binding protein Machinery gene
  JYG38_RS23330 (JYG38_23330) - 5197183..5198577 (-) 1395 WP_034100992.1 MFS transporter -
  JYG38_RS23335 (JYG38_23335) uvrA 5198756..5201590 (+) 2835 WP_213632568.1 excinuclease ABC subunit UvrA -
  JYG38_RS23340 (JYG38_23340) bfr 5201657..5202121 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18989.15 Da        Isoelectric Point: 5.9455

>NTDB_id=541832 JYG38_RS23325 WP_017849542.1 5196658..5197173(-) (ssb) [Pseudomonas rhodesiae strain DLA23]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAA
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=541832 JYG38_RS23325 WP_017849542.1 5196658..5197173(-) (ssb) [Pseudomonas rhodesiae strain DLA23]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCTGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAATTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCGCGCCCACAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCGGCACCTCAGCCGGCGGCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I3WGC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.286

100

0.596
  ssb Neisseria gonorrhoeae MS11

48.315

100

0.503
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.503
  ssb Neisseria meningitidis MC58

46.591

100

0.48