Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JYG35_RS24125 Genome accession   NZ_CP070980
Coordinates   5302815..5303330 (-) Length   171 a.a.
NCBI ID   WP_213548123.1    Uniprot ID   -
Organism   Pseudomonas rhodesiae strain AAMF24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5297815..5308330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG35_RS24100 (JYG35_24100) - 5297930..5299039 (-) 1110 WP_213548117.1 DUF3182 family protein -
  JYG35_RS24105 (JYG35_24105) - 5299211..5300182 (-) 972 WP_213548119.1 GlxA family transcriptional regulator -
  JYG35_RS24110 (JYG35_24110) - 5300279..5300842 (+) 564 WP_213548121.1 cysteine hydrolase family protein -
  JYG35_RS24115 (JYG35_24115) tam 5300864..5301625 (-) 762 WP_099312849.1 trans-aconitate 2-methyltransferase -
  JYG35_RS24120 (JYG35_24120) - 5301909..5302733 (+) 825 WP_034115256.1 alpha/beta hydrolase -
  JYG35_RS24125 (JYG35_24125) ssb 5302815..5303330 (-) 516 WP_213548123.1 single-stranded DNA-binding protein Machinery gene
  JYG35_RS24130 (JYG35_24130) - 5303340..5304734 (-) 1395 WP_034100992.1 MFS transporter -
  JYG35_RS24135 (JYG35_24135) uvrA 5304913..5307747 (+) 2835 WP_034100993.1 excinuclease ABC subunit UvrA -
  JYG35_RS24140 (JYG35_24140) bfr 5307814..5308278 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18998.16 Da        Isoelectric Point: 6.4788

>NTDB_id=541810 JYG35_RS24125 WP_213548123.1 5302815..5303330(-) (ssb) [Pseudomonas rhodesiae strain AAMF24]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPHPSQQPQRESRPAPQQAAPQPAA
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=541810 JYG35_RS24125 WP_213548123.1 5302815..5303330(-) (ssb) [Pseudomonas rhodesiae strain AAMF24]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAATTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCGCGCCCACATCCAAGCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCGGCACCCCAGCCGGCTGCG
GATTTCGACAGCTTTGATGATGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.714

100

0.591
  ssb Glaesserella parasuis strain SC1401

45.699

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.497
  ssb Neisseria meningitidis MC58

46.111

100

0.485