Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JYG32_RS16655 Genome accession   NZ_CP070977
Coordinates   3583374..3583928 (+) Length   184 a.a.
NCBI ID   WP_096471798.1    Uniprot ID   -
Organism   Burkholderia pyrrocinia strain Hargis     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3578374..3588928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG32_RS16645 (JYG32_16645) uvrA 3578934..3581819 (-) 2886 WP_174382784.1 excinuclease ABC subunit UvrA -
  JYG32_RS16650 (JYG32_16650) - 3582084..3583271 (+) 1188 WP_213264126.1 MFS transporter -
  JYG32_RS16655 (JYG32_16655) ssb 3583374..3583928 (+) 555 WP_096471798.1 single-stranded DNA-binding protein Machinery gene
  JYG32_RS16660 (JYG32_16660) mug 3584049..3584600 (+) 552 WP_213264127.1 G/U mismatch-specific DNA glycosylase -
  JYG32_RS16665 (JYG32_16665) - 3584587..3585210 (+) 624 WP_213264128.1 DNA-3-methyladenine glycosylase -
  JYG32_RS16670 (JYG32_16670) - 3585312..3586076 (+) 765 WP_048246937.1 ParA family protein -
  JYG32_RS16675 (JYG32_16675) phaP 3586584..3587168 (+) 585 WP_174384459.1 TIGR01841 family phasin -
  JYG32_RS16680 (JYG32_16680) - 3587478..3588659 (+) 1182 WP_213264129.1 acetyl-CoA C-acetyltransferase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 18726.49 Da        Isoelectric Point: 5.3400

>NTDB_id=541789 JYG32_RS16655 WP_096471798.1 3583374..3583928(+) (ssb) [Burkholderia pyrrocinia strain Hargis]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGGAGGGGGGGDEGGYGGGYGGGGGGRGEQAERGGGGGGRAGGAARGGAG
GGAQSRPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=541789 JYG32_RS16655 WP_096471798.1 3583374..3583928(+) (ssb) [Burkholderia pyrrocinia strain Hargis]
ATGGCATCCGTCAACAAGGTCATCCTCGTCGGCAATCTCGGCGCCGATCCTGAAGTCCGTTACCTGCCGAGCGGCGACGC
AGTTGCGAACATCCGTCTCGCGACGACCGACCGCTACAAGGACAAGGCAAGCGGCGATTTCAAGGAAATGACCGAGTGGC
ACCGCGTCGCGTTCTTCGGCCGTCTCGCGGAAATCGTCAGCGAATACCTGAAGAAGGGTTCGTCGGTCTATATCGAAGGC
CGCATCCGCACGCGCAAGTGGCAAGGCCAGGACGGCCAGGACCGTTACTCGACCGAAATCGTTGCCGACCAGATGCAGAT
GCTCGGCGGCCGCGGCGGCGCGGGCGGCGGCGGTGGCGGCGGTGACGAAGGCGGTTATGGCGGCGGCTACGGTGGTGGTG
GCGGCGGCCGCGGCGAACAGGCGGAACGCGGCGGCGGCGGCGGCGGTCGTGCCGGCGGCGCGGCGCGTGGCGGTGCTGGC
GGCGGCGCGCAGAGCCGTCCGAGCGCACCGGCAGGCGGCGGCTTCGACGAGATGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.969

100

0.516
  ssb Glaesserella parasuis strain SC1401

46.561

100

0.478
  ssb Neisseria meningitidis MC58

42.857

98.913

0.424
  ssb Neisseria gonorrhoeae MS11

42.857

98.913

0.424