Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JYG33_RS12745 Genome accession   NZ_CP070975
Coordinates   2780309..2780833 (-) Length   174 a.a.
NCBI ID   WP_207872587.1    Uniprot ID   -
Organism   Alcaligenes sp. SORT26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2775309..2785833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG33_RS12715 (JYG33_12715) - 2775345..2775887 (+) 543 WP_222669157.1 Chromate resistance protein ChrB -
  JYG33_RS12720 (JYG33_12720) - 2775862..2777097 (+) 1236 WP_207875851.1 MFS transporter -
  JYG33_RS12725 (JYG33_12725) - 2777137..2777523 (-) 387 WP_207872583.1 RidA family protein -
  JYG33_RS12730 (JYG33_12730) - 2777585..2778559 (-) 975 WP_207872584.1 tripartite tricarboxylate transporter substrate binding protein -
  JYG33_RS12735 (JYG33_12735) - 2778571..2779488 (-) 918 WP_207872585.1 fumarylacetoacetate hydrolase family protein -
  JYG33_RS12740 (JYG33_12740) - 2779488..2780162 (-) 675 WP_207872586.1 GntR family transcriptional regulator -
  JYG33_RS12745 (JYG33_12745) ssb 2780309..2780833 (-) 525 WP_207872587.1 single-stranded DNA-binding protein Machinery gene
  JYG33_RS12750 (JYG33_12750) - 2781095..2782306 (-) 1212 WP_207872588.1 MFS transporter -
  JYG33_RS12755 (JYG33_12755) uvrA 2782418..2785336 (+) 2919 WP_207875853.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18932.95 Da        Isoelectric Point: 5.3335

>NTDB_id=541694 JYG33_RS12745 WP_207872587.1 2780309..2780833(-) (ssb) [Alcaligenes sp. SORT26]
MASVNKVILVGNLGRDPEVRYSAEGSAICNISIATTSQWKDRTSGERREETEWHRVVFYNRLAEIAGEYLRKGRPVYVEG
RLRTRKWTGQDGQDKFTTEIIAEQMQMLGGRDGDMGGGGGSMGGGEYGGGGGGGAPAPQRAQRPAPQQQQQQQAPRNTAP
MSDNLADMDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=541694 JYG33_RS12745 WP_207872587.1 2780309..2780833(-) (ssb) [Alcaligenes sp. SORT26]
ATGGCATCGGTAAATAAAGTCATTCTGGTGGGCAACCTCGGCCGCGACCCAGAAGTACGCTACAGCGCAGAAGGCTCGGC
TATCTGCAATATTTCCATTGCCACGACTTCGCAGTGGAAAGATCGTACCTCCGGCGAGCGCCGCGAGGAAACCGAATGGC
ACCGTGTGGTGTTCTACAACCGTCTGGCTGAAATCGCGGGTGAGTACCTGCGCAAAGGCCGTCCCGTTTACGTAGAAGGT
CGTCTGCGCACCCGTAAATGGACGGGTCAGGATGGCCAGGACAAATTCACCACTGAAATCATTGCCGAGCAAATGCAAAT
GCTGGGTGGTCGTGACGGCGATATGGGCGGCGGCGGTGGCAGCATGGGTGGTGGCGAATACGGCGGTGGTGGTGGCGGTG
GTGCTCCTGCACCGCAACGTGCACAGCGTCCTGCTCCCCAGCAGCAACAACAGCAACAGGCCCCACGTAATACAGCTCCT
ATGTCGGACAATCTGGCCGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.717

100

0.557
  ssb Glaesserella parasuis strain SC1401

48.705

100

0.54
  ssb Neisseria meningitidis MC58

45.652

100

0.483
  ssb Neisseria gonorrhoeae MS11

46.893

100

0.477