Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JX001_RS07345 Genome accession   NZ_CP070968
Coordinates   1507216..1507713 (+) Length   165 a.a.
NCBI ID   WP_017504124.1    Uniprot ID   A0A2X1BAH6
Organism   Brevundimonas fontaquae strain CS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1502216..1512713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JX001_RS07330 (JX001_07330) - 1503175..1505874 (+) 2700 WP_205682919.1 transcriptional regulator -
  JX001_RS07335 (JX001_07335) - 1505956..1506627 (+) 672 WP_205682920.1 hypothetical protein -
  JX001_RS07340 (JX001_07340) - 1506627..1507052 (+) 426 WP_205682921.1 hypothetical protein -
  JX001_RS07345 (JX001_07345) ssb 1507216..1507713 (+) 498 WP_017504124.1 single-stranded DNA-binding protein Machinery gene
  JX001_RS07350 (JX001_07350) - 1507724..1508179 (+) 456 WP_205682922.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  JX001_RS07355 (JX001_07355) - 1508176..1509477 (+) 1302 WP_205682923.1 SDR family oxidoreductase -
  JX001_RS07360 (JX001_07360) - 1509474..1509944 (+) 471 WP_205682924.1 DUF2269 domain-containing protein -
  JX001_RS07365 (JX001_07365) - 1510008..1510946 (+) 939 WP_205682925.1 DMT family transporter -
  JX001_RS07370 (JX001_07370) - 1510976..1511509 (+) 534 WP_205682926.1 DUF1003 domain-containing protein -
  JX001_RS07375 (JX001_07375) - 1511549..1512124 (-) 576 WP_205682927.1 superoxide dismutase family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17815.66 Da        Isoelectric Point: 5.9696

>NTDB_id=541624 JX001_RS07345 WP_017504124.1 1507216..1507713(+) (ssb) [Brevundimonas fontaquae strain CS1]
MAGSVNKVILVGNLGRDPEIRSMPNGDRIANLSIATSETWRDKSSGERKEKTEWHRVVIFNDNIVKVVENYVKKGSTVYI
EGALQTRKWTDQQGVEKYSTEIVVSRFKGELTMLGGRSEGGSSGGGYGGGGGRGDDDYSSGFSTGGANKPSGPKESYDLN
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=541624 JX001_RS07345 WP_017504124.1 1507216..1507713(+) (ssb) [Brevundimonas fontaquae strain CS1]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTGGGGCGCGACCCCGAAATCCGCTCCATGCCCAACGGCGA
CCGCATCGCCAACCTGTCCATCGCCACTTCGGAAACCTGGCGCGACAAGTCCTCGGGCGAGCGCAAGGAAAAGACCGAAT
GGCACCGGGTCGTCATCTTCAACGACAACATCGTCAAGGTGGTCGAAAACTATGTGAAGAAGGGCTCGACCGTCTACATC
GAGGGCGCGCTGCAGACCCGCAAATGGACCGACCAGCAGGGCGTCGAAAAGTATTCGACCGAGATCGTCGTCAGCCGCTT
CAAGGGTGAACTGACCATGCTGGGCGGCCGTTCGGAAGGCGGCTCGTCGGGCGGTGGTTACGGCGGCGGCGGTGGTCGCG
GCGATGACGACTACTCCTCGGGCTTTTCCACCGGCGGCGCGAACAAGCCGAGCGGCCCCAAGGAAAGCTACGACCTGAAC
GACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X1BAH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.561

100

0.533
  ssb Vibrio cholerae strain A1552

48

100

0.509
  ssb Neisseria meningitidis MC58

40

100

0.436
  ssb Neisseria gonorrhoeae MS11

40

100

0.436