Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JX000_RS11525 | Genome accession | NZ_CP070964 |
| Coordinates | 2330936..2331451 (-) | Length | 171 a.a. |
| NCBI ID | WP_002451520.1 | Uniprot ID | A0A2T4Q0A0 |
| Organism | Staphylococcus sp. SB1-57 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2316008..2333219 | 2330936..2331451 | within | 0 |
Gene organization within MGE regions
Location: 2316008..2333219
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JX000_RS11420 (JX000_11420) | - | 2316008..2316184 (+) | 177 | WP_182459457.1 | hypothetical protein | - |
| JX000_RS11425 (JX000_11425) | - | 2316259..2316513 (-) | 255 | WP_002451497.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| JX000_RS11430 (JX000_11430) | - | 2317072..2317305 (-) | 234 | WP_241004985.1 | hypothetical protein | - |
| JX000_RS11435 (JX000_11435) | - | 2319956..2320477 (-) | 522 | WP_206140717.1 | terminase small subunit | - |
| JX000_RS11440 (JX000_11440) | - | 2320482..2320823 (-) | 342 | WP_206140718.1 | MarR family transcriptional regulator | - |
| JX000_RS11445 (JX000_11445) | - | 2320826..2321284 (-) | 459 | WP_206140719.1 | pathogenicity island protein | - |
| JX000_RS11450 (JX000_11450) | - | 2321346..2321996 (-) | 651 | WP_206140720.1 | hypothetical protein | - |
| JX000_RS11455 (JX000_11455) | - | 2322026..2322367 (-) | 342 | WP_126510278.1 | pathogenicity island protein | - |
| JX000_RS11460 (JX000_11460) | - | 2322777..2323418 (-) | 642 | WP_206140721.1 | pathogenicity island protein | - |
| JX000_RS11465 (JX000_11465) | - | 2323419..2323784 (-) | 366 | WP_206140722.1 | hypothetical protein | - |
| JX000_RS11470 (JX000_11470) | - | 2323777..2324130 (-) | 354 | WP_017636848.1 | hypothetical protein | - |
| JX000_RS11475 (JX000_11475) | - | 2324373..2325740 (-) | 1368 | WP_206140723.1 | DNA primase family protein | - |
| JX000_RS11480 (JX000_11480) | - | 2325752..2326621 (-) | 870 | WP_206140724.1 | primase alpha helix C-terminal domain-containing protein | - |
| JX000_RS11485 (JX000_11485) | - | 2326712..2327011 (-) | 300 | WP_206140725.1 | DUF1474 family protein | - |
| JX000_RS11490 (JX000_11490) | - | 2327011..2327430 (-) | 420 | WP_241004986.1 | pathogenicity island protein | - |
| JX000_RS11495 (JX000_11495) | - | 2327432..2327569 (-) | 138 | WP_000800860.1 | hypothetical protein | - |
| JX000_RS11500 (JX000_11500) | - | 2327585..2327857 (-) | 273 | WP_206140726.1 | helix-turn-helix domain-containing protein | - |
| JX000_RS11505 (JX000_11505) | - | 2327857..2328078 (-) | 222 | WP_107536183.1 | helix-turn-helix transcriptional regulator | - |
| JX000_RS11510 (JX000_11510) | - | 2328270..2329193 (+) | 924 | WP_107560731.1 | helix-turn-helix transcriptional regulator | - |
| JX000_RS11515 (JX000_11515) | - | 2329202..2330425 (+) | 1224 | WP_206140727.1 | site-specific integrase | - |
| JX000_RS11520 (JX000_11520) | rpsR | 2330651..2330893 (-) | 243 | WP_002451519.1 | 30S ribosomal protein S18 | - |
| JX000_RS11525 (JX000_11525) | ssbA | 2330936..2331451 (-) | 516 | WP_002451520.1 | single-stranded DNA-binding protein | Machinery gene |
| JX000_RS11530 (JX000_11530) | rpsF | 2331473..2331769 (-) | 297 | WP_002451521.1 | 30S ribosomal protein S6 | - |
| JX000_RS11535 (JX000_11535) | - | 2332145..2332966 (+) | 822 | WP_206140728.1 | GH25 family lysozyme | - |
| JX000_RS11540 (JX000_11540) | - | 2333028..2333219 (+) | 192 | WP_002451523.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18884.43 Da Isoelectric Point: 4.7410
>NTDB_id=541619 JX000_RS11525 WP_002451520.1 2330936..2331451(-) (ssbA) [Staphylococcus sp. SB1-57]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSRPNSNQSDNPFANANG
PIDISDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSRPNSNQSDNPFANANG
PIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=541619 JX000_RS11525 WP_002451520.1 2330936..2331451(-) (ssbA) [Staphylococcus sp. SB1-57]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TTAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
CTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTACGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAGACCTAATTCAAATCAATCAGATAATCCATTTGCGAACGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TTAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
CTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTACGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAGACCTAATTCAAATCAATCAGATAATCCATTTGCGAACGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.453 |
100 |
0.643 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.601 |
100 |
0.532 |
| ssb | Glaesserella parasuis strain SC1401 |
36.872 |
100 |
0.386 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
61.988 |
0.374 |