Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JTR57_RS19110 Genome accession   NZ_CP070962
Coordinates   3908086..3908622 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain K-12 J53     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3903086..3913622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTR57_RS19090 soxR 3904814..3905278 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  JTR57_RS19095 soxS 3905364..3905687 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  JTR57_RS19100 pdeC 3905690..3907276 (-) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  JTR57_RS19105 yjcB 3907706..3907987 (+) 282 WP_001295689.1 YjcB family protein -
  JTR57_RS19110 ssb 3908086..3908622 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JTR57_RS19115 uvrA 3908876..3911698 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  JTR57_RS19120 yjbR 3911733..3912089 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  JTR57_RS19125 yjbQ 3912093..3912509 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JTR57_RS19130 aphA 3912620..3913333 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=541579 JTR57_RS19110 WP_000168305.1 3908086..3908622(-) (ssb) [Escherichia coli strain K-12 J53]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=541579 JTR57_RS19110 WP_000168305.1 3908086..3908622(-) (ssb) [Escherichia coli strain K-12 J53]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489