Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JX580_RS09355 Genome accession   NZ_CP070959
Coordinates   1938218..1938817 (-) Length   199 a.a.
NCBI ID   WP_349251701.1    Uniprot ID   -
Organism   Thiomicrospira microaerophila strain BDL05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1933218..1943817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JX580_RS09325 (JX580_09340) proB 1933394..1934515 (-) 1122 WP_248850275.1 glutamate 5-kinase -
  JX580_RS09330 (JX580_09345) cgtA 1934519..1935553 (-) 1035 WP_248850276.1 Obg family GTPase CgtA -
  JX580_RS09335 (JX580_09350) rpmA 1935684..1935947 (-) 264 WP_248850277.1 50S ribosomal protein L27 -
  JX580_RS09340 (JX580_09355) rplU 1936017..1936331 (-) 315 WP_248850278.1 50S ribosomal protein L21 -
  JX580_RS09345 (JX580_09360) ispB 1936547..1937512 (+) 966 WP_248850279.1 octaprenyl diphosphate synthase -
  JX580_RS09350 (JX580_09365) - 1937509..1938081 (-) 573 WP_248850280.1 hypothetical protein -
  JX580_RS09355 (JX580_09370) ssb 1938218..1938817 (-) 600 WP_349251701.1 single-stranded DNA-binding protein Machinery gene
  JX580_RS09360 (JX580_09375) - 1938817..1940211 (-) 1395 WP_248850282.1 MFS transporter -
  JX580_RS09365 (JX580_09380) - 1940295..1940975 (+) 681 WP_248850283.1 SIMPL domain-containing protein -
  JX580_RS09370 (JX580_09385) - 1940944..1942500 (-) 1557 WP_248850284.1 cryptochrome/photolyase family protein -
  JX580_RS09375 (JX580_09390) - 1942493..1942663 (-) 171 WP_248850285.1 DUF2256 domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21630.86 Da        Isoelectric Point: 5.2691

>NTDB_id=541539 JX580_RS09355 WP_349251701.1 1938218..1938817(-) (ssb) [Thiomicrospira microaerophila strain BDL05]
MMRGVNKVILVGTLGRDPEVRYAANGNAIANLSVATSEQWNDRATGEKQERTEWHRVVIFGKLAEIAQQYLTKGSQVYLE
GKLQTRKWQDQATGQDKYSTEVVIDVSGSMQMLGGRNNNQGAQGGYGQSGDVGFDQSYDGGYGQAPAPQRPAQPAMGGYA
QAPMAGGAPQRPPQQPQKPAPQQRPAYQPNDFDDDDVPF

Nucleotide


Download         Length: 600 bp        

>NTDB_id=541539 JX580_RS09355 WP_349251701.1 1938218..1938817(-) (ssb) [Thiomicrospira microaerophila strain BDL05]
ATTATGCGCGGAGTAAACAAAGTCATTTTAGTAGGCACGCTAGGGCGTGATCCAGAAGTACGTTATGCAGCCAATGGCAA
TGCGATTGCTAATTTGAGTGTCGCTACCAGTGAACAATGGAACGACCGTGCCACAGGTGAAAAGCAAGAACGTACTGAGT
GGCATCGAGTTGTGATTTTTGGCAAGTTGGCTGAAATCGCACAGCAATATCTCACGAAAGGCTCGCAGGTTTACTTGGAA
GGCAAGTTGCAAACGCGAAAATGGCAAGACCAGGCAACAGGTCAGGATAAGTATTCAACCGAAGTGGTGATTGATGTCAG
TGGTAGTATGCAGATGCTGGGTGGACGCAATAATAATCAAGGCGCTCAGGGAGGTTATGGGCAGAGCGGTGATGTAGGTT
TTGACCAAAGTTATGATGGCGGTTATGGTCAGGCCCCCGCACCTCAGCGACCTGCACAACCTGCAATGGGCGGCTATGCG
CAAGCACCTATGGCCGGTGGTGCACCACAGCGTCCACCTCAACAACCACAAAAGCCCGCACCTCAGCAACGTCCGGCTTA
CCAACCGAATGACTTTGACGATGATGATGTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.545

99.497

0.543
  ssb Glaesserella parasuis strain SC1401

51.256

100

0.513
  ssb Neisseria gonorrhoeae MS11

48.98

98.492

0.482
  ssb Neisseria meningitidis MC58

48.469

98.492

0.477