Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JW813_RS17585 Genome accession   NZ_CP070936
Coordinates   3764483..3764926 (-) Length   147 a.a.
NCBI ID   WP_265859210.1    Uniprot ID   -
Organism   Clostridium botulinum strain ZJK-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3759483..3769926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW813_RS17565 (JW813_17435) rplI 3761291..3761734 (-) 444 WP_012425064.1 50S ribosomal protein L9 -
  JW813_RS17570 (JW813_17440) - 3761737..3763677 (-) 1941 WP_265859209.1 DHH family phosphoesterase -
  JW813_RS17575 (JW813_17445) - 3763702..3764022 (-) 321 WP_003374679.1 MazG-like family protein -
  JW813_RS17580 (JW813_17450) rpsR 3764210..3764461 (-) 252 WP_003369777.1 30S ribosomal protein S18 -
  JW813_RS17585 (JW813_17455) ssbA 3764483..3764926 (-) 444 WP_265859210.1 single-stranded DNA-binding protein Machinery gene
  JW813_RS17590 (JW813_17460) rpsF 3764940..3765227 (-) 288 WP_026072100.1 30S ribosomal protein S6 -
  JW813_RS17595 (JW813_17465) - 3765337..3765528 (-) 192 WP_003373736.1 DUF951 domain-containing protein -
  JW813_RS17600 (JW813_17470) - 3765528..3766421 (-) 894 WP_012451521.1 mechanosensitive ion channel family protein -
  JW813_RS17605 (JW813_17475) - 3766449..3766688 (-) 240 WP_041082208.1 DUF3343 domain-containing protein -
  JW813_RS17610 (JW813_17480) - 3767091..3767744 (+) 654 WP_017826772.1 LysE family transporter -
  JW813_RS17615 (JW813_17485) - 3767760..3768917 (+) 1158 WP_265859211.1 aminotransferase class V-fold PLP-dependent enzyme -
  JW813_RS17620 (JW813_17490) yyaC 3769219..3769821 (+) 603 WP_017826774.1 spore protease YyaC -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16095.81 Da        Isoelectric Point: 4.5882

>NTDB_id=541443 JW813_RS17585 WP_265859210.1 3764483..3764926(-) (ssbA) [Clostridium botulinum strain ZJK-3]
MNKVVLIGRLTKDPELRFTPGAGTAVTTLTLAVDKYNSKSGQKEADFVPVVVWGKQAESTANYMSKGSQMAISGRIQTRN
YEAKDGTKRYVTEVVATEVQFLSKSNASGNVGTNYSNNTEYSSSNNPFDDMNFEEDITPVDDGDMPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=541443 JW813_RS17585 WP_265859210.1 3764483..3764926(-) (ssbA) [Clostridium botulinum strain ZJK-3]
ATGAACAAAGTAGTTTTAATCGGAAGATTGACGAAAGATCCAGAACTAAGATTTACTCCTGGAGCTGGAACAGCAGTAAC
TACCTTAACATTAGCAGTTGATAAGTATAATTCTAAATCTGGTCAAAAAGAAGCGGACTTTGTACCTGTAGTTGTATGGG
GAAAACAAGCTGAAAGTACTGCGAATTACATGAGTAAGGGTAGCCAAATGGCTATAAGCGGTAGAATTCAAACCAGAAAT
TATGAAGCAAAAGATGGAACAAAGAGATATGTTACAGAAGTAGTTGCTACAGAAGTTCAATTTTTAAGTAAATCAAATGC
TTCAGGAAATGTTGGTACTAATTATAGTAACAACACTGAATATTCATCATCAAATAATCCATTTGATGATATGAACTTTG
AAGAAGACATAACTCCAGTAGATGATGGAGATATGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

42.442

100

0.497
  ssbA Streptococcus mutans UA159

43.165

94.558

0.408
  ssb Latilactobacillus sakei subsp. sakei 23K

41.606

93.197

0.388
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.398

70.068

0.374