Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JR892_RS20705 Genome accession   NZ_CP070914
Coordinates   4315488..4316024 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 65COLEC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4288461..4339477 4315488..4316024 within 0


Gene organization within MGE regions


Location: 4288461..4339477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR892_RS20605 (JR892_20605) yjcF 4288461..4289754 (+) 1294 Protein_4074 pentapeptide repeat-containing protein -
  JR892_RS20610 (JR892_20610) yjcE 4289908..4291557 (-) 1650 WP_000402207.1 Na+/H+ antiporter -
  JR892_RS20615 (JR892_20615) ghxP 4291709..4293058 (-) 1350 WP_000106882.1 guanine/hypoxanthine transporter GhxP -
  JR892_RS20620 (JR892_20620) soxR 4293604..4294068 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  JR892_RS20625 (JR892_20625) soxS 4294154..4294477 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  JR892_RS20630 (JR892_20630) pdeC 4294480..4296066 (-) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  JR892_RS20635 (JR892_20635) yjcB 4296496..4296777 (+) 282 WP_001295689.1 YjcB family protein -
  JR892_RS20645 (JR892_20645) - 4298608..4301850 (-) 3243 WP_001251763.1 type I restriction endonuclease subunit R -
  JR892_RS20650 (JR892_20650) - 4301863..4303251 (-) 1389 WP_001103168.1 DNA-processing protein DprA -
  JR892_RS20655 (JR892_20655) - 4303248..4305380 (-) 2133 WP_001077932.1 RecQ family ATP-dependent DNA helicase -
  JR892_RS20660 (JR892_20660) - 4305395..4306549 (-) 1155 WP_000118957.1 restriction endonuclease subunit S -
  JR892_RS20665 (JR892_20665) - 4306546..4308687 (-) 2142 WP_034613856.1 N-6 DNA methylase -
  JR892_RS20670 (JR892_20670) - 4308700..4308924 (-) 225 WP_001283160.1 helix-turn-helix domain-containing protein -
  JR892_RS20675 (JR892_20675) - 4309022..4309573 (-) 552 WP_001136617.1 hypothetical protein -
  JR892_RS20680 (JR892_20680) - 4309573..4310715 (-) 1143 WP_001172094.1 helix-turn-helix domain-containing protein -
  JR892_RS20685 (JR892_20685) - 4310776..4311252 (-) 477 WP_205900146.1 protein kinase -
  JR892_RS20690 (JR892_20690) - 4311245..4312696 (-) 1452 WP_251327729.1 integrase -
  JR892_RS20695 (JR892_20695) - 4312951..4314071 (+) 1121 WP_085949406.1 IS3-like element ISSen4 family transposase -
  JR892_RS20700 (JR892_20700) - 4314098..4315270 (-) 1173 WP_205900147.1 site-specific integrase -
  JR892_RS20705 (JR892_20705) ssb 4315488..4316024 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JR892_RS20710 (JR892_20710) uvrA 4316278..4319100 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  JR892_RS20715 (JR892_20715) yjbR 4319135..4319491 (-) 357 WP_077492758.1 MmcQ/YjbR family DNA-binding protein -
  JR892_RS20720 (JR892_20720) yjbQ 4319495..4319911 (-) 417 WP_077492759.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JR892_RS20725 (JR892_20725) aphA 4320022..4320735 (-) 714 WP_001315956.1 acid phosphatase AphA -
  JR892_RS20730 (JR892_20730) yjbS 4321137..4321340 (+) 204 WP_001321562.1 protein YjbS -
  JR892_RS20735 (JR892_20735) tyrB 4321842..4323035 (-) 1194 WP_000486988.1 aromatic amino acid transaminase -
  JR892_RS20740 (JR892_20740) alr 4323288..4324367 (-) 1080 WP_001147328.1 alanine racemase -
  JR892_RS20745 (JR892_20745) dnaB 4324420..4325835 (-) 1416 WP_000918363.1 replicative DNA helicase -
  JR892_RS20750 (JR892_20750) qorA 4325918..4326901 (+) 984 WP_205900148.1 quinone oxidoreductase -
  JR892_RS20755 (JR892_20755) pspG 4327067..4327309 (-) 243 WP_000891404.1 envelope stress response protein PspG -
  JR892_RS20760 (JR892_20760) dusA 4327443..4328480 (-) 1038 WP_001329186.1 tRNA dihydrouridine(20/20a) synthase DusA -
  JR892_RS20765 (JR892_20765) yjbM 4328843..4329550 (-) 708 WP_113387841.1 DUF2713 family protein -
  JR892_RS24690 - 4329574..4329858 (-) 285 WP_077492761.1 hypothetical protein -
  JR892_RS20770 (JR892_20770) zur 4330177..4330692 (+) 516 WP_001295691.1 zinc uptake transcriptional repressor Zur -
  JR892_RS20775 (JR892_20775) yjbJ 4330734..4330943 (-) 210 WP_001030593.1 CsbD family protein -
  JR892_RS20780 (JR892_20780) dinF 4331059..4332384 (-) 1326 WP_001301116.1 MATE family efflux transporter DinF -
  JR892_RS20785 (JR892_20785) lexA 4332457..4333065 (-) 609 WP_000646078.1 transcriptional repressor LexA -
  JR892_RS20790 (JR892_20790) dgkA 4333175..4333543 (-) 369 WP_000002907.1 diacylglycerol kinase -
  JR892_RS20795 (JR892_20795) plsB 4333714..4336137 (+) 2424 WP_000017354.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  JR892_RS20800 (JR892_20800) ubiA 4336292..4337164 (-) 873 WP_000455227.1 4-hydroxybenzoate octaprenyltransferase -
  JR892_RS20805 (JR892_20805) ubiC 4337177..4337674 (-) 498 WP_001295693.1 chorismate lyase -
  JR892_RS20810 (JR892_20810) - 4337897..4339477 (-) 1581 Protein_4116 SopA family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=541373 JR892_RS20705 WP_000168305.1 4315488..4316024(-) (ssb) [Escherichia coli strain 65COLEC]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=541373 JR892_RS20705 WP_000168305.1 4315488..4316024(-) (ssb) [Escherichia coli strain 65COLEC]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489