Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JW980_RS00940 Genome accession   NZ_CP070866
Coordinates   204871..205455 (+) Length   194 a.a.
NCBI ID   WP_004691666.1    Uniprot ID   A0A7H8SPE4
Organism   Acinetobacter johnsonii strain XY27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 199871..210455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS00920 (JW980_00920) - 200792..201166 (-) 375 WP_205667470.1 hypothetical protein -
  JW980_RS00925 (JW980_00925) tenA 201329..202003 (-) 675 WP_004691671.1 thiaminase II -
  JW980_RS00930 (JW980_00930) - 202216..203295 (+) 1080 WP_058870674.1 DUF475 domain-containing protein -
  JW980_RS00935 (JW980_00935) - 203455..204819 (+) 1365 WP_005401546.1 MFS transporter -
  JW980_RS00940 (JW980_00940) ssb 204871..205455 (+) 585 WP_004691666.1 single-stranded DNA-binding protein Machinery gene
  JW980_RS00945 (JW980_00945) ssb 205820..206434 (+) 615 WP_392453105.1 single-stranded DNA-binding protein -
  JW980_RS00950 (JW980_00950) - 206628..208046 (-) 1419 WP_205667472.1 aspartate ammonia-lyase -
  JW980_RS00955 (JW980_00955) - 208181..209071 (+) 891 WP_205667473.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21300.03 Da        Isoelectric Point: 6.4819

>NTDB_id=541131 JW980_RS00940 WP_004691666.1 204871..205455(+) (ssb) [Acinetobacter johnsonii strain XY27]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYGGNPAAGNSNNQQ
SGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=541131 JW980_RS00940 WP_004691666.1 204871..205455(+) (ssb) [Acinetobacter johnsonii strain XY27]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTCCCAAATGGTGGTTC
GTTGACCCAGTTTTCAATTGCCACGAGCGATTCTTGGACAGACAAAAGCACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGTTACACAACCGTCTAGGTGAAATTGCGCAACAATACCTACGTAAAGGTTCGAAAGTTTATATTGAAGGT
TCACTGCGTACTCGTCAGTGGACAGATCAAAATGGTCAAGAACGTTACACCACAGAAATTCGTGGTGAGCAAATGCAGAT
GCTCGACAACAACCGTCAGCAAGGTGAGCAAATGCAAGGCGGAAATGATGGTTATGCACAACCACGTTTCAACAATAACC
AAGGTGGTGGTTATAACAATAACAACAACCAAGGCGGTTATGGCGGCAATCCTGCAGCAGGTAATAGCAACAATCAACAA
AGTGGTTATGCGAACAATAACCCAAGCGGTTTTGCACCAAAGGCGGCTCCTCAGTCAGCGCCTGCGGCAGCACCAGCAGA
TATGGATGATGATCTTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SPE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.724

100

0.459
  ssb Neisseria meningitidis MC58

41.414

100

0.423
  ssb Neisseria gonorrhoeae MS11

41.414

100

0.423