Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A0J47_RS03140 Genome accession   NZ_CP070624
Coordinates   639755..640291 (+) Length   178 a.a.
NCBI ID   WP_068945504.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain RM-71     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 634755..645291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0J47_RS03130 (A0J47_003130) - 634759..636510 (-) 1752 WP_068945502.1 PglL family O-oligosaccharyltransferase -
  A0J47_RS03135 (A0J47_003135) uvrA 636663..639488 (-) 2826 WP_068945503.1 excinuclease ABC subunit UvrA -
  A0J47_RS03140 (A0J47_003140) ssb 639755..640291 (+) 537 WP_068945504.1 single-stranded DNA-binding protein Machinery gene
  A0J47_RS03145 (A0J47_003145) csrD 640439..642379 (+) 1941 WP_068945505.1 RNase E specificity factor CsrD -
  A0J47_RS03150 (A0J47_003150) - 642595..643995 (+) 1401 WP_162598060.1 PilN domain-containing protein -
  A0J47_RS03155 (A0J47_003155) pilO 643992..644627 (+) 636 WP_068945507.1 type 4a pilus biogenesis protein PilO -
  A0J47_RS03160 (A0J47_003160) - 644620..644943 (+) 324 WP_065170863.1 hypothetical protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19744.81 Da        Isoelectric Point: 4.9059

>NTDB_id=540934 A0J47_RS03140 WP_068945504.1 639755..640291(+) (ssb) [Photobacterium damselae subsp. damselae strain RM-71]
MASRGVNKVILVGNLGNDPEVRYMPNGGAVANITIATSETWRDKATGENREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEIVVQGFNGVMQMLGGRQNQGGQGMGGQQQQGGWGQPQQPAAQNFAPQQQQQQAPAQQPA
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=540934 A0J47_RS03140 WP_068945504.1 639755..640291(+) (ssb) [Photobacterium damselae subsp. damselae strain RM-71]
ATGGCCAGTCGTGGCGTAAACAAAGTTATCCTAGTGGGTAACCTAGGAAATGATCCTGAAGTTCGTTACATGCCAAATGG
CGGTGCGGTTGCAAACATTACCATTGCAACTTCAGAAACTTGGCGTGATAAAGCAACCGGCGAAAATCGTGAAAAAACTG
AATGGCACCGTGTGGTTCTATTTGGCAAATTAGCTGAAGTTGCTGGTGAATACCTACGTAAAGGTTCTCAAGTATACATT
GAGGGTCAGCTACAAACTCGTAAGTGGCAGAACCAACAGGGCCAAGATCAGTACACTACAGAGATCGTAGTACAAGGCTT
TAATGGCGTTATGCAAATGTTGGGTGGCCGTCAAAACCAAGGTGGTCAAGGTATGGGCGGTCAACAGCAGCAAGGCGGTT
GGGGTCAACCACAACAGCCAGCAGCACAAAACTTTGCTCCACAACAACAGCAGCAACAAGCTCCAGCTCAACAACCTGCA
CCTCAGCAGCAGTACAATGAGCCGCCAATGGACTTCGATGACGATATTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

78.022

100

0.798
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.596
  ssb Neisseria meningitidis MC58

47.514

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.483