Detailed information NTG0054093

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: M5M_RS14445
• Genome accession: NC_018868
• Coordinates: 3197672..3198742 (+)
• Length: 356 a.a.
• NCBI ID: WP_024330466.1
• Uniprot ID: -
• Organism: Simiduia agarivorans SA1 = DSM 21679
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3192672..3203742

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M5M_RS14430 (M5M_14707)	-	3192871..3193551 (+)	681	WP_015048229.1	thermonuclease family protein	-
M5M_RS14435 (M5M_14715)	-	3193702..3194970 (+)	1269	WP_015048230.1	malic enzyme-like NAD(P)-binding protein	-
M5M_RS14440 (M5M_14717)	-	3195007..3197526 (-)	2520	WP_015048231.1	penicillin-binding protein 1A	-
M5M_RS14445 (M5M_14725)	comM	3197672..3198742 (+)	1071	WP_024330466.1	pilus assembly protein PilM	Machinery gene
M5M_RS14450 (M5M_14730)	-	3198742..3199311 (+)	570	WP_015048233.1	PilN domain-containing protein	-
M5M_RS14455 (M5M_14735)	-	3199311..3199925 (+)	615	WP_016389624.1	type 4a pilus biogenesis protein PilO	-
M5M_RS14460 (M5M_14740)	-	3199928..3200452 (+)	525	WP_015048235.1	pilus assembly protein PilP	-
M5M_RS14465 (M5M_14745)	-	3200458..3202629 (+)	2172	WP_015048236.1	type IV pilus secretin PilQ	-
M5M_RS14470 (M5M_14750)	-	3202626..3203138 (+)	513	WP_015048237.1	shikimate kinase	-

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 38563.87 Da
• Isoelectric Point: 4.2752

>NTDB_id=54093 M5M_RS14445 WP_024330466.1 3197672..3198742(+) (comM) [Simiduia agarivorans SA1 = DSM 21679]
MGILGFLEKKTKPVIGLDISSTSVKLLELSRQGERYRVESYAVRALPPNAVSEKNIADVEVVADVVKKVVQQAKCKTQNA
AVAVAGSAVITKLIEMPGGLSDDAMESQISLEADQYIPYPLEEVAIDFEVQGPSPRNPDQVEVLLAACRRENVDLRTEVL
EQAGLTPKVVDVEAYTMERAFSLVARQLEDDSDQVVAIVDIGATMTTLSVLLEGKTIYTREQLFGGKQLTEEIQRRYGLS
AEEAGLAKKQGGLPDDYETDVLLQFKESVVQQVTRSLQFFFSSSQYNDVDHIVLAGGVAAMEGLADLIEEKLGTQTSIAN
PFASMSVSPRVNAVALASDAPSLMIATGLAMRSFDD

Nucleotide

• Length: 1071 bp

>NTDB_id=54093 M5M_RS14445 WP_024330466.1 3197672..3198742(+) (comM) [Simiduia agarivorans SA1 = DSM 21679]
ATGGGGATTTTGGGATTTCTCGAGAAAAAGACAAAACCGGTGATCGGACTGGATATCAGCTCCACGTCCGTCAAGCTGCT
TGAGTTGTCCCGCCAGGGCGAGCGCTACCGTGTTGAAAGTTACGCCGTCCGGGCCCTGCCGCCAAACGCCGTATCGGAGA
AGAATATTGCCGATGTGGAAGTGGTGGCCGACGTGGTCAAGAAGGTCGTCCAGCAGGCGAAATGCAAGACCCAGAACGCG
GCTGTAGCCGTGGCGGGCTCTGCAGTGATCACCAAGTTGATCGAAATGCCGGGTGGATTGTCAGACGATGCCATGGAATC
CCAGATCTCGCTGGAAGCGGATCAGTATATTCCGTATCCATTGGAAGAAGTCGCCATCGATTTCGAGGTTCAGGGCCCAT
CGCCCCGCAACCCCGACCAGGTGGAGGTGCTGTTGGCGGCCTGTCGACGTGAGAACGTAGATCTTCGGACAGAAGTGCTG
GAGCAGGCCGGTTTGACACCCAAGGTGGTTGACGTTGAAGCCTATACCATGGAGCGGGCCTTCTCGTTGGTAGCGCGCCA
GCTCGAAGACGATTCCGATCAGGTGGTAGCGATCGTGGATATTGGCGCCACCATGACCACGCTCAGCGTGCTGTTGGAAG
GCAAAACCATTTACACCCGCGAGCAACTATTCGGCGGCAAGCAGCTGACCGAGGAAATCCAGCGCCGTTATGGTTTGTCG
GCTGAAGAGGCTGGTCTTGCCAAGAAGCAGGGCGGTCTGCCCGATGACTACGAAACCGACGTCTTGTTGCAGTTCAAAGA
AAGTGTGGTGCAGCAAGTAACCCGTTCTTTGCAGTTCTTCTTTTCTTCCAGTCAATACAACGATGTGGACCACATTGTCC
TCGCCGGTGGTGTCGCCGCAATGGAAGGCCTTGCGGATCTGATTGAAGAAAAACTGGGCACGCAAACCAGTATTGCCAAC
CCCTTTGCGAGCATGTCTGTCTCGCCCCGAGTGAATGCAGTAGCGCTGGCCTCTGATGCGCCGTCGCTCATGATTGCCAC
CGGATTGGCTATGAGGAGCTTTGACGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (16-354)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	56.657	99.157	0.562
pilM	Acinetobacter baumannii D1279779	56.374	99.157	0.559
comM	Acinetobacter baylyi ADP1	55.085	99.438	0.548
pilM	Legionella pneumophila strain ERS1305867	46.893	99.438	0.466