Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JR347_RS02490 Genome accession   NZ_CP070608
Coordinates   518331..518792 (-) Length   153 a.a.
NCBI ID   WP_205722478.1    Uniprot ID   A0A974WKR9
Organism   Fulvivirga lutea strain S481     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 513331..523792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR347_RS02465 (JR347_02465) recG 513592..515685 (-) 2094 WP_205722474.1 ATP-dependent DNA helicase RecG -
  JR347_RS02470 (JR347_02470) - 515722..516027 (-) 306 WP_235689735.1 DUF86 domain-containing protein -
  JR347_RS02475 (JR347_02475) - 516076..516366 (-) 291 WP_205722476.1 nucleotidyltransferase family protein -
  JR347_RS02480 (JR347_02480) gldD 516389..516979 (-) 591 WP_205722477.1 gliding motility lipoprotein GldD -
  JR347_RS02485 (JR347_02485) gldE 516954..518243 (-) 1290 WP_235689790.1 gliding motility-associated protein GldE -
  JR347_RS02490 (JR347_02490) ssb 518331..518792 (-) 462 WP_205722478.1 single-stranded DNA-binding protein Machinery gene
  JR347_RS02495 (JR347_02495) mutY 518847..519911 (-) 1065 WP_205722479.1 A/G-specific adenine glycosylase -
  JR347_RS02500 (JR347_02500) - 520052..520354 (+) 303 WP_205722480.1 HU family DNA-binding protein -
  JR347_RS02505 (JR347_02505) - 520415..521239 (+) 825 WP_205722481.1 lipopolysaccharide assembly protein LapB -
  JR347_RS02510 (JR347_02510) - 521453..523009 (+) 1557 WP_205722482.1 Rne/Rng family ribonuclease -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16725.44 Da        Isoelectric Point: 4.6019

>NTDB_id=540904 JR347_RS02490 WP_205722478.1 518331..518792(-) (ssb) [Fulvivirga lutea strain S481]
MSGVNKVIIVGRLGKDPEVRHLENGASVANFPVATSETYKDRNTGERKEQTEWHNVVLWRGLADVAEKYLNKGDMVYIEG
KLRTRSWEKDGITRYTTEIVGDNMTMLSPKGSNDGGQSTGGSMSSSASQQEQNVASTPAGDIALEDESDDLPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=540904 JR347_RS02490 WP_205722478.1 518331..518792(-) (ssb) [Fulvivirga lutea strain S481]
ATGTCAGGAGTAAATAAAGTAATTATTGTTGGTAGGTTAGGGAAAGATCCTGAAGTAAGACATTTAGAAAACGGAGCAAG
TGTAGCGAATTTTCCTGTAGCTACTTCCGAGACATATAAAGATAGAAATACCGGAGAGCGCAAAGAGCAGACTGAGTGGC
ATAATGTAGTGTTATGGAGAGGTCTTGCAGATGTTGCTGAAAAGTACCTGAACAAAGGAGATATGGTTTATATAGAAGGT
AAACTGAGAACTCGTTCATGGGAAAAAGACGGTATTACAAGATATACTACTGAAATAGTAGGTGATAATATGACTATGCT
AAGCCCAAAAGGCTCCAATGATGGAGGCCAATCAACGGGTGGTAGTATGAGCAGCAGTGCATCTCAACAGGAACAGAATG
TAGCCTCTACACCGGCAGGTGATATTGCTTTGGAGGATGAATCGGATGATTTACCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.402

100

0.516
  ssb Neisseria meningitidis MC58

42.775

100

0.484
  ssb Neisseria gonorrhoeae MS11

42.775

100

0.484
  ssb Glaesserella parasuis strain SC1401

53.077

84.967

0.451