Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JW296_RS21025 Genome accession   NZ_CP070549
Coordinates   3841547..3842071 (+) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter freundii strain CF49969     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3836547..3847071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW296_RS21010 (JW296_21005) aphA 3837160..3837873 (+) 714 WP_003826615.1 acid phosphatase AphA -
  JW296_RS21015 (JW296_21010) - 3838001..3838357 (+) 357 WP_003031719.1 MmcQ/YjbR family DNA-binding protein -
  JW296_RS21020 (JW296_21015) uvrA 3838473..3841295 (-) 2823 WP_003031720.1 excinuclease ABC subunit UvrA -
  JW296_RS21025 (JW296_21020) ssb 3841547..3842071 (+) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JW296_RS21030 (JW296_21025) - 3842553..3844862 (+) 2310 WP_128295865.1 autotransporter outer membrane beta-barrel domain-containing protein -
  JW296_RS21035 (JW296_21030) - 3844946..3845227 (-) 282 WP_003031727.1 YjcB family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=540655 JW296_RS21025 WP_003826621.1 3841547..3842071(+) (ssb) [Citrobacter freundii strain CF49969]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=540655 JW296_RS21025 WP_003826621.1 3841547..3842071(+) (ssb) [Citrobacter freundii strain CF49969]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAGGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5