Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JW295_RS18575 Genome accession   NZ_CP070544
Coordinates   3219799..3220323 (+) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter freundii strain CF48846     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3214799..3225323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW295_RS18560 (JW295_18565) aphA 3215412..3216125 (+) 714 WP_003826615.1 acid phosphatase AphA -
  JW295_RS18565 (JW295_18570) - 3216253..3216609 (+) 357 WP_003031719.1 MmcQ/YjbR family DNA-binding protein -
  JW295_RS18570 (JW295_18575) uvrA 3216725..3219547 (-) 2823 WP_044715251.1 excinuclease ABC subunit UvrA -
  JW295_RS18575 (JW295_18580) ssb 3219799..3220323 (+) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JW295_RS18580 (JW295_18585) - 3220390..3220671 (-) 282 WP_058842581.1 YjcB family protein -
  JW295_RS18585 (JW295_18590) - 3221224..3222810 (+) 1587 WP_003031729.1 EAL domain-containing protein -
  JW295_RS18590 (JW295_18595) soxS 3222813..3223136 (-) 324 WP_003031731.1 superoxide response transcriptional regulator SoxS -
  JW295_RS18595 (JW295_18600) soxR 3223223..3223681 (+) 459 WP_003031733.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=540631 JW295_RS18575 WP_003826621.1 3219799..3220323(+) (ssb) [Citrobacter freundii strain CF48846]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=540631 JW295_RS18575 WP_003826621.1 3219799..3220323(+) (ssb) [Citrobacter freundii strain CF48846]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAGGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5