Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JW294_RS09115 Genome accession   NZ_CP070537
Coordinates   1819301..1819822 (-) Length   173 a.a.
NCBI ID   WP_032099136.1    Uniprot ID   A0AAN5MI84
Organism   Morganella morganii strain MM48659     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1814301..1824822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW294_RS09095 (JW294_09090) - 1814594..1815343 (-) 750 WP_036413660.1 sulfite exporter TauE/SafE family protein -
  JW294_RS09100 (JW294_09095) - 1815514..1816071 (+) 558 WP_004238248.1 XRE family transcriptional regulator -
  JW294_RS09105 (JW294_09100) ilvN 1816114..1816398 (-) 285 WP_004238249.1 acetolactate synthase small subunit -
  JW294_RS09110 (JW294_09105) ilvB 1816416..1818107 (-) 1692 WP_032099135.1 acetolactate synthase large subunit -
  JW294_RS09115 (JW294_09110) ssb 1819301..1819822 (-) 522 WP_032099136.1 single-stranded DNA-binding protein Machinery gene
  JW294_RS09120 (JW294_09115) uvrA 1820099..1822933 (+) 2835 WP_032099137.1 excinuclease ABC subunit UvrA -
  JW294_RS09125 (JW294_09120) - 1823065..1823331 (+) 267 WP_036413658.1 DksA/TraR family C4-type zinc finger protein -
  JW294_RS09130 (JW294_09125) - 1823383..1824579 (-) 1197 WP_015422420.1 amino acid aminotransferase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18740.79 Da        Isoelectric Point: 4.9567

>NTDB_id=540601 JW294_RS09115 WP_032099136.1 1819301..1819822(-) (ssb) [Morganella morganii strain MM48659]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVTNITLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLKKGSQVYI
EGSLQTRKWQDQSGQERYTTEVVVNIGGSMQMLGGRSGGGDNMSQGGGWGQPQQPQQGQQFSGGGNPRPAQQPAAAAPQS
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=540601 JW294_RS09115 WP_032099136.1 1819301..1819822(-) (ssb) [Morganella morganii strain MM48659]
ATGGCCAGCAGAGGCGTCAACAAAGTCATTCTTATCGGGAACCTGGGTCAGGATCCGGAAGTGCGTTACATGCCTAACGG
CGGTGCGGTTACCAACATCACACTGGCGACATCAGAATCATGGCGTGATAAACAAACCGGCGAAATGAAAGAGAAGACCG
AATGGCACCGTGTGGTGATCTTCGGCAAACTGGCAGAAATTGCCGGTGAATATCTGAAAAAAGGCTCACAGGTTTATATC
GAAGGTTCACTCCAGACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGTTACACCACAGAAGTCGTGGTGAATATCGG
CGGCAGCATGCAGATGCTGGGCGGCCGCAGCGGCGGTGGCGACAATATGTCTCAGGGCGGCGGCTGGGGTCAGCCACAGC
AGCCACAACAAGGCCAGCAGTTCAGCGGCGGCGGCAACCCGCGCCCGGCACAGCAGCCGGCAGCAGCAGCGCCGCAAAGC
AATGAACCGCCAATGGATTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.73

100

0.746
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.613
  ssb Neisseria meningitidis MC58

48.295

100

0.491
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.491