Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JW291_RS18265 Genome accession   NZ_CP070524
Coordinates   3649812..3650330 (-) Length   172 a.a.
NCBI ID   WP_004241546.1    Uniprot ID   A0AAE4FEZ9
Organism   Morganella morganii strain MM46903     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3644812..3655330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW291_RS18245 (JW291_18245) - 3645104..3645853 (-) 750 WP_004241554.1 sulfite exporter TauE/SafE family protein -
  JW291_RS18250 (JW291_18250) - 3646024..3646581 (+) 558 WP_004238248.1 XRE family transcriptional regulator -
  JW291_RS18255 (JW291_18255) ilvN 3646624..3646908 (-) 285 WP_004241553.1 acetolactate synthase small subunit -
  JW291_RS18260 (JW291_18260) ilvB 3646926..3648617 (-) 1692 WP_004241551.1 acetolactate synthase large subunit -
  JW291_RS18265 (JW291_18265) ssb 3649812..3650330 (-) 519 WP_004241546.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JW291_RS18270 (JW291_18270) uvrA 3650609..3653443 (+) 2835 WP_004241545.1 excinuclease ABC subunit UvrA -
  JW291_RS18275 (JW291_18275) - 3653575..3653841 (+) 267 WP_004241544.1 DksA/TraR family C4-type zinc finger protein -
  JW291_RS18280 (JW291_18280) - 3653890..3655086 (-) 1197 WP_004241543.1 amino acid aminotransferase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18669.71 Da        Isoelectric Point: 4.9567

>NTDB_id=540542 JW291_RS18265 WP_004241546.1 3649812..3650330(-) (ssb) [Morganella morganii strain MM46903]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVTNITLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLKKGSQVYI
EGSLQTRKWQDQSGQERYTTEVVVNIGGSMQMLGGRSGGGDNMSQGGGWGQPQQPQQGQQFSGGGNPRPAQQPAAAPQSN
EPPMDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=540542 JW291_RS18265 WP_004241546.1 3649812..3650330(-) (ssb) [Morganella morganii strain MM46903]
ATGGCCAGCAGAGGCGTCAACAAAGTCATTCTTATCGGGAACCTGGGTCAGGATCCGGAAGTGCGTTACATGCCTAACGG
CGGTGCGGTTACCAACATCACACTGGCGACATCAGAATCATGGCGTGATAAACAAACCGGCGAAATGAAAGAGAAGACCG
AATGGCACCGTGTGGTGATCTTCGGCAAACTGGCAGAAATTGCCGGTGAATATCTGAAAAAAGGTTCACAGGTTTATATC
GAAGGTTCACTCCAGACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGTTACACCACAGAAGTCGTGGTGAATATCGG
CGGCAGCATGCAGATGCTGGGCGGCCGCAGCGGCGGTGGCGACAATATGTCTCAGGGCGGCGGCTGGGGTCAGCCACAGC
AGCCACAACAAGGCCAGCAGTTCAGCGGCGGCGGCAACCCGCGCCCGGCACAGCAGCCGGCAGCAGCACCGCAAAGCAAT
GAACCGCCAATGGATTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.73

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.61
  ssb Neisseria meningitidis MC58

47.727

100

0.488
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.488