Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6J48_RS10125 Genome accession   NZ_CP070518
Coordinates   2163108..2163701 (+) Length   197 a.a.
NCBI ID   WP_004639902.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2158108..2168701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS10100 (I6J48_10100) - 2158176..2158982 (-) 807 WP_205468392.1 SDR family oxidoreductase -
  I6J48_RS10105 (I6J48_10105) - 2159085..2159456 (-) 372 WP_003654012.1 MerR family transcriptional regulator -
  I6J48_RS10110 (I6J48_10110) tenA 2159523..2160197 (-) 675 WP_004639906.1 thiaminase II -
  I6J48_RS10115 (I6J48_10115) - 2160462..2161544 (+) 1083 WP_003654009.1 DUF475 domain-containing protein -
  I6J48_RS10120 (I6J48_10120) - 2161692..2163056 (+) 1365 WP_003654007.1 MFS transporter -
  I6J48_RS10125 (I6J48_10125) ssb 2163108..2163701 (+) 594 WP_004639902.1 single-stranded DNA-binding protein Machinery gene
  I6J48_RS10130 (I6J48_10130) - 2163742..2164065 (-) 324 WP_017388641.1 AzlD domain-containing protein -
  I6J48_RS10135 (I6J48_10135) - 2164062..2164757 (-) 696 WP_205468393.1 AzlC family ABC transporter permease -
  I6J48_RS10140 (I6J48_10140) - 2164826..2165374 (+) 549 WP_005044199.1 helix-turn-helix domain-containing protein -
  I6J48_RS10145 (I6J48_10145) - 2165701..2167143 (+) 1443 WP_005044197.1 amino acid permease -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21366.15 Da        Isoelectric Point: 6.4832

>NTDB_id=540487 I6J48_RS10125 WP_004639902.1 2163108..2163701(+) (ssb) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDGRQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYNQNSGGGYGSN
PAGFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=540487 I6J48_RS10125 WP_004639902.1 2163108..2163701(+) (ssb) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACCTTTCCAAATGGGGGTTC
GTTGACTCAATTTTCAATCGCGACAAGTGAAGCTTGGACCGATAAAACTTCAGGTGAGCGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTACGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGCACGCGTCAGTGGACTGATCAAAATGGTCAAGAGCGCTATACAACAGAAATTCGTGGCGAACAGATGCAAAT
GTTAGATGGTCGTCAACAAGGTGAACAAGGGTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAATAACCAAGGTGGTGGTTATAACCAAAATAGTGGTGGCGGCTATGGCAGCAAC
CCAGCTGGTTTTGGTAATGGTGGCAACAGCCCGCAAGGTGGTGGCTTTGCTCCTAAAGCACCACAACAGCCTGCGTCTGC
ACCAGCTGATTTAGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.804

100

0.518
  ssb Vibrio cholerae strain A1552

44.059

100

0.452
  ssb Neisseria meningitidis MC58

39.487

98.985

0.391
  ssb Neisseria gonorrhoeae MS11

38.462

98.985

0.381