Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JWV26_RS06665 Genome accession   NZ_CP070505
Coordinates   1450852..1451343 (-) Length   163 a.a.
NCBI ID   WP_003463262.1    Uniprot ID   A0A1G7PSP6
Organism   Ectopseudomonas toyotomiensis strain SM2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1445852..1456343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWV26_RS06640 (JWV26_06640) - 1445981..1447330 (-) 1350 WP_021489596.1 MotA/TolQ/ExbB proton channel family protein -
  JWV26_RS06645 (JWV26_06645) - 1447327..1448100 (-) 774 WP_161867396.1 DUF3450 domain-containing protein -
  JWV26_RS06650 (JWV26_06650) - 1448293..1448976 (+) 684 WP_206418685.1 OmpW family outer membrane protein -
  JWV26_RS06655 (JWV26_06655) - 1449032..1449955 (-) 924 WP_196460658.1 NAD-dependent epimerase/dehydratase family protein -
  JWV26_RS06660 (JWV26_06660) - 1449948..1450832 (-) 885 WP_072424507.1 sugar nucleotide-binding protein -
  JWV26_RS06665 (JWV26_06665) ssb 1450852..1451343 (-) 492 WP_003463262.1 single-stranded DNA-binding protein Machinery gene
  JWV26_RS06670 (JWV26_06670) - 1451353..1452747 (-) 1395 WP_125874142.1 MFS transporter -
  JWV26_RS06675 (JWV26_06675) uvrA 1452883..1455717 (+) 2835 WP_206418686.1 excinuclease ABC subunit UvrA -
  JWV26_RS06680 (JWV26_06680) bfr 1455764..1456228 (-) 465 WP_079782690.1 bacterioferritin -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18170.27 Da        Isoelectric Point: 5.3412

>NTDB_id=540317 JWV26_RS06665 WP_003463262.1 1450852..1451343(-) (ssb) [Ectopseudomonas toyotomiensis strain SM2]
MARGVNKVILVGTCGQDPETRYLPSGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVALFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPSGDEGGAPRQSRPAPQREPQQAPRQERPAPQQAQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=540317 JWV26_RS06665 WP_003463262.1 1450852..1451343(-) (ssb) [Ectopseudomonas toyotomiensis strain SM2]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGCGGCCAGGACCCGGAAACACGCTACCTGCCCAGCGGCAA
CGCGGTCACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGACCGGGCAGAAGGTCGAGAAGACCGAGT
GGCACCGCGTCGCCCTGTTCGGCAAGGTTGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGGTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACCGAGATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGTCGTCCGAGCGGTGATGAAGGCGGCGCGCCGCGCCAGTCGCGTCCGGCTCCGCAGCGCGAGC
CGCAACAGGCCCCGCGTCAGGAGCGTCCGGCTCCGCAGCAGGCCCAGCCAGCGCCTGACTACGACAGCTTCGATGACGAC
ATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G7PSP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.303

100

0.626
  ssb Glaesserella parasuis strain SC1401

49.171

100

0.546
  ssb Neisseria meningitidis MC58

48.023

100

0.521
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.521