Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | JWU58_RS04920 | Genome accession | NZ_CP070503 |
| Coordinates | 1053709..1054581 (-) | Length | 290 a.a. |
| NCBI ID | WP_206421552.1 | Uniprot ID | - |
| Organism | Pseudomonas atacamensis strain SM1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1048709..1059581
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JWU58_RS04880 (JWU58_04880) | - | 1049059..1050357 (-) | 1299 | WP_016773144.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| JWU58_RS04885 (JWU58_04885) | - | 1050421..1050594 (-) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| JWU58_RS04890 (JWU58_04890) | - | 1050646..1051173 (-) | 528 | WP_016773146.1 | MOSC domain-containing protein | - |
| JWU58_RS04895 (JWU58_04895) | - | 1051170..1051796 (-) | 627 | WP_007909887.1 | DUF1780 domain-containing protein | - |
| JWU58_RS04900 (JWU58_04900) | - | 1051914..1052603 (+) | 690 | WP_206421551.1 | energy-coupling factor ABC transporter permease | - |
| JWU58_RS04905 (JWU58_04905) | - | 1052669..1052884 (+) | 216 | WP_016773148.1 | hypothetical protein | - |
| JWU58_RS04910 (JWU58_04910) | yacG | 1052892..1053092 (-) | 201 | WP_016773149.1 | DNA gyrase inhibitor YacG | - |
| JWU58_RS04915 (JWU58_04915) | coaE | 1053089..1053712 (-) | 624 | WP_130887103.1 | dephospho-CoA kinase | - |
| JWU58_RS04920 (JWU58_04920) | pilD | 1053709..1054581 (-) | 873 | WP_206421552.1 | prepilin peptidase | Machinery gene |
| JWU58_RS04925 (JWU58_04925) | pilC | 1054583..1055800 (-) | 1218 | WP_024014342.1 | type II secretion system F family protein | Machinery gene |
| JWU58_RS04930 (JWU58_04930) | pilB | 1055803..1057500 (-) | 1698 | WP_206421553.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JWU58_RS04935 (JWU58_04935) | - | 1057727..1058164 (+) | 438 | WP_122698547.1 | pilin | - |
| JWU58_RS04940 (JWU58_04940) | - | 1058464..1058817 (+) | 354 | WP_016773155.1 | BON domain-containing protein | - |
| JWU58_RS04945 (JWU58_04945) | - | 1059082..1059381 (-) | 300 | WP_071173628.1 | DUF2845 domain-containing protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31820.05 Da Isoelectric Point: 7.6859
>NTDB_id=540296 JWU58_RS04920 WP_206421552.1 1053709..1054581(-) (pilD) [Pseudomonas atacamensis strain SM1]
MPIDELFAVYPLAFAVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPSETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLLLRGRCSACSAPISKRYPLTELACGLLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQATSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
MPIDELFAVYPLAFAVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPSETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLLLRGRCSACSAPISKRYPLTELACGLLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQATSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=540296 JWU58_RS04920 WP_206421552.1 1053709..1054581(-) (pilD) [Pseudomonas atacamensis strain SM1]
ATGCCTATCGATGAACTGTTTGCTGTGTATCCGCTGGCCTTTGCGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAATGTTGTGGTCTGGCGCCTGCCGAAAATGCTCGAGCGCGACTGGCGCCAGCAAGCCCATGATGTGCTCGGCC
TGCCCAGCGAAACGCCCGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCGTGGGAAAACATTCCGCTGCTCAGTTATCTGCTGCTGCGCGGGCGCTGCTCGGCCTGTTCGGCGCCGATCAGTAAACG
CTACCCGCTGACCGAACTGGCCTGCGGCCTGCTGTCGGCATTCATCGCCTGGCATCTGGGCTTCGGCTGGCCGGCGGGCT
TGCTGATCTTGCTGACGTGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGCTGCTGCCCGATGTGCTGGTG
CTACCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGTGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGCATCGGTCATGGCGATT
TCAAGCTGCTGGCCTTGCTTGGCGCTTGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCCTTGGTGGGA
GCGATTTTGGGCGTCGTCATGCTGCGTCTGCGCGCCCAGGCAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
ATGCCTATCGATGAACTGTTTGCTGTGTATCCGCTGGCCTTTGCGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAATGTTGTGGTCTGGCGCCTGCCGAAAATGCTCGAGCGCGACTGGCGCCAGCAAGCCCATGATGTGCTCGGCC
TGCCCAGCGAAACGCCCGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCGTGGGAAAACATTCCGCTGCTCAGTTATCTGCTGCTGCGCGGGCGCTGCTCGGCCTGTTCGGCGCCGATCAGTAAACG
CTACCCGCTGACCGAACTGGCCTGCGGCCTGCTGTCGGCATTCATCGCCTGGCATCTGGGCTTCGGCTGGCCGGCGGGCT
TGCTGATCTTGCTGACGTGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGCTGCTGCCCGATGTGCTGGTG
CTACCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGTGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGCATCGGTCATGGCGATT
TCAAGCTGCTGGCCTTGCTTGGCGCTTGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCCTTGGTGGGA
GCGATTTTGGGCGTCGTCATGCTGCGTCTGCGCGCCCAGGCAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.225 |
97.931 |
0.531 |
| pilD | Vibrio campbellii strain DS40M4 |
52.632 |
98.276 |
0.517 |
| pilD | Neisseria gonorrhoeae MS11 |
46.341 |
98.966 |
0.459 |
| pilD | Acinetobacter nosocomialis M2 |
47.253 |
94.138 |
0.445 |
| pilD | Acinetobacter baumannii D1279779 |
47.08 |
94.483 |
0.445 |