Detailed information NTG0540294

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: JWU58_RS04820
• Genome accession: NZ_CP070503
• Coordinates: 1037574..1038920 (-)
• Length: 448 a.a.
• NCBI ID: WP_206421548.1
• Uniprot ID: -
• Organism: Pseudomonas atacamensis strain SM1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1032574..1043920

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JWU58_RS04805 (JWU58_04805)	-	1032817..1035906 (+)	3090	WP_206421546.1	pilus assembly protein	-
JWU58_RS04810 (JWU58_04810)	-	1035922..1036323 (+)	402	WP_130902285.1	type IV pilin protein	-
JWU58_RS04815 (JWU58_04815)	thiO	1036381..1037481 (+)	1101	WP_206421547.1	glycine oxidase ThiO	-
JWU58_RS04820 (JWU58_04820)	pilR	1037574..1038920 (-)	1347	WP_206421548.1	sigma-54-dependent transcriptional regulator	Regulator
JWU58_RS04825 (JWU58_04825)	pilS	1038917..1040506 (-)	1590	WP_206421549.1	sensor histidine kinase	Regulator
JWU58_RS04830 (JWU58_04830)	-	1040496..1040729 (-)	234	WP_016773138.1	PP0621 family protein	-
JWU58_RS04835 (JWU58_04835)	-	1040857..1041873 (-)	1017	WP_016773139.1	outer membrane protein assembly factor BamD	-
JWU58_RS04840 (JWU58_04840)	rluD	1042025..1042987 (+)	963	WP_016773140.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
JWU58_RS04845 (JWU58_04845)	pgeF	1042984..1043706 (+)	723	WP_206421550.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50160.45 Da
• Isoelectric Point: 6.3600

>NTDB_id=540294 JWU58_RS04820 WP_206421548.1 1037574..1038920(-) (pilR) [Pseudomonas atacamensis strain SM1]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSPPMANLRRQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAGQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQVDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=540294 JWU58_RS04820 WP_206421548.1 1037574..1038920(-) (pilR) [Pseudomonas atacamensis strain SM1]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTGGAGACCTTCAGCGCACGCAATCTGGGCGAAGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATTCAGCAACGCGATCCACACCTGCCG
GTGGCGATGATCACTGCGTACGGAAGCCTGGAAACGGCTATCAATGCGCTGAAGGCCGGGGCGTTCGACTTCCTCACCAA
ACCGGTGGAACTGCCGCGCTTGCGCGAACTGGTCAGCTCGGCGCTGCGCCTGCCGACAGCGGGCGGCTTGAGCACGGCAA
TCGAGCGACGCTTGCTGGGCGACTCGCCGCCGATGGCCAATCTGCGCAGGCAGATCGACAAGCTCGCACGCAGTCAGGCA
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCGCGTCTGATCCACGAACAAGGTCCGCGCGCCGG
CCAACCCTTTGTGCCGGTGAACTGCGGGGCGATTCCATCGGAGCTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCA
GTTTCACTGGAGCCGTCGAAGACAAGCCGGGGCTGTTTCAAGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GACCTGCCACTGTCGATGCAGGTGAAGCTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACAGTGGTCGACGTACGCATCCTTTGCGCCACGCACAAAGACCTTGAAGCCGAAGTTTCGGCCGAACGCTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGTGTGCCGTCCCTGCGCGAACGCCGTGACGACATTGAGGCGCTTGCC
ATGCACGTGCTCAAGCGCCTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCACCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAATGTACGCGAACTGGAGAACGTCCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAGGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGACGGGGCGATGGCCGATCTGACGCAGGTCGACAAT
CTTGAGGATTATCTGGAGAGCGTCGAGAGGAAGCTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCGATGCGTTATCGGCTGAAGAAATTGGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.104	98.884	0.772
pilR	Acinetobacter baumannii strain A118	49.455	100	0.507
luxO	Vibrio cholerae strain A1552	40.342	91.295	0.368