Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   JWU58_RS04825 Genome accession   NZ_CP070503
Coordinates   1038917..1040506 (-) Length   529 a.a.
NCBI ID   WP_206421549.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain SM1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1033917..1045506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWU58_RS04810 (JWU58_04810) - 1035922..1036323 (+) 402 WP_130902285.1 type IV pilin protein -
  JWU58_RS04815 (JWU58_04815) thiO 1036381..1037481 (+) 1101 WP_206421547.1 glycine oxidase ThiO -
  JWU58_RS04820 (JWU58_04820) pilR 1037574..1038920 (-) 1347 WP_206421548.1 sigma-54-dependent transcriptional regulator Regulator
  JWU58_RS04825 (JWU58_04825) pilS 1038917..1040506 (-) 1590 WP_206421549.1 sensor histidine kinase Regulator
  JWU58_RS04830 (JWU58_04830) - 1040496..1040729 (-) 234 WP_016773138.1 PP0621 family protein -
  JWU58_RS04835 (JWU58_04835) - 1040857..1041873 (-) 1017 WP_016773139.1 outer membrane protein assembly factor BamD -
  JWU58_RS04840 (JWU58_04840) rluD 1042025..1042987 (+) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JWU58_RS04845 (JWU58_04845) pgeF 1042984..1043706 (+) 723 WP_206421550.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58596.33 Da        Isoelectric Point: 7.0024

>NTDB_id=540295 JWU58_RS04825 WP_206421549.1 1038917..1040506(-) (pilS) [Pseudomonas atacamensis strain SM1]
MVAEAANADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSHLQGHLID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGEIREQANER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQADVWLALFVDPDSQLAVLEVQDNGPGVSADEQAHLFEP
FFTTSSKGTGLGLYLSRELCESNQARLDFKSRQGGGCFCITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=540295 JWU58_RS04825 WP_206421549.1 1038917..1040506(-) (pilS) [Pseudomonas atacamensis strain SM1]
GTGGTCGCTGAGGCCGCCAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTGTACCGTTTAAGTGT
CGGCATCACTCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GCGGCAGCTGGCTGTACCTGATCATCAACATGCTGCTGGTGGTGTTCCTTGAAAACACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCGCTCGTCGATGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCGGGCGGCGTGGCCAGTGCGCTGGGCAATTT
GCTGGTGGTCTCGGTGGCGATCAGCAACACCCTGCTGCGCCGACGCATCGGCCTGCTGATTGCCGCCATTGCGGCGATCG
GCATTGTCGGCCTGAGCTTTCTGCTCGGGCTCAGCCGCCCCTTGAGCGCCAACGCCTACTTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTCGCCGCCTCATTGCTGGTGCAAGGGCTGATCCGCCGCCTCGAAGTCAGCGAAACCCTGGCCGAACAGCG
CGCCAGCGAGGTGGTCAGCCTGGAGGCGCTGAACGCATTGATCCTGCAACGCATGCGCACGGGGATTCTAGTGCTCGACG
AGCAACGCCGGGTGCAACTGGCCAATCACAGTGCGCAGAGTCTGCTCGGCCATAGTCACCTGCAAGGTCATTTGATCGAC
GAATATTCGCCAGCACTGGTCGAGCGTCTGCAACTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAATGGCCTTGAGCTGCAACCCAGCTTCATCGCCCTTGAGCAGAGTCCGAACCAGCAGACGCTGGTGTTTCTCGAAG
ACCTGGCGCAAATCACCCAACAGGCGCAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCACTGGGCGCGATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGACTTCGTCGGCGAAATCCGCGAGCAGGCCAACGAGCGC
CAGCACATTCATCTGCGGATCAATTCCGGCGATTTCACCACGCTGATGGACCCCAACCAATTGCGGCAGATTCTCGACAA
TCTGATACGCAACGCCTGGCGTCACAGTGCGCAACTGCACGAGCAGGCCGACGTCTGGCTGGCACTGTTCGTCGACCCCG
ACAGCCAATTGGCAGTGCTCGAAGTGCAGGACAACGGCCCCGGTGTGTCGGCCGATGAACAGGCGCATCTGTTTGAGCCG
TTCTTCACTACCAGCAGCAAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTTGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.599