Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JWU58_RS03805 Genome accession   NZ_CP070503
Coordinates   819885..820400 (+) Length   171 a.a.
NCBI ID   WP_016772950.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain SM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 814885..825400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWU58_RS03790 (JWU58_03790) bfr 814920..815387 (+) 468 WP_016772947.1 bacterioferritin -
  JWU58_RS03795 (JWU58_03795) uvrA 815452..818286 (-) 2835 WP_016772948.1 excinuclease ABC subunit UvrA -
  JWU58_RS03800 (JWU58_03800) - 818478..819875 (+) 1398 WP_016772949.1 MFS transporter -
  JWU58_RS03805 (JWU58_03805) ssb 819885..820400 (+) 516 WP_016772950.1 single-stranded DNA-binding protein Machinery gene
  JWU58_RS03810 (JWU58_03810) - 820596..821753 (-) 1158 WP_123443235.1 glutathionylspermidine synthase family protein -
  JWU58_RS03815 (JWU58_03815) - 821755..822459 (-) 705 WP_016772951.1 DUF1190 domain-containing protein -
  JWU58_RS03820 (JWU58_03820) - 822478..822903 (-) 426 WP_016772952.1 DUF350 domain-containing protein -
  JWU58_RS03825 (JWU58_03825) - 822919..823569 (-) 651 WP_024014515.1 DUF2491 family protein -
  JWU58_RS03830 (JWU58_03830) - 823780..824478 (-) 699 WP_016772954.1 PspA/IM30 family protein -
  JWU58_RS03835 (JWU58_03835) - 824496..825077 (-) 582 WP_223631314.1 YjfI family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19058.19 Da        Isoelectric Point: 5.9314

>NTDB_id=540292 JWU58_RS03805 WP_016772950.1 819885..820400(+) (ssb) [Pseudomonas atacamensis strain SM1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGNNYQQQAPRQQAPRPQQSAPQQRSAPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=540292 JWU58_RS03805 WP_016772950.1 819885..820400(+) (ssb) [Pseudomonas atacamensis strain SM1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTATCGATGTTCGGCAAGGTGGCCGAGATCGCCGGTGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAGCAAGGCGGCAACAACTACCAGCAGCAGGCGCCACGTCAGC
AGGCTCCACGCCCGCAGCAGTCGGCTCCACAGCAGCGTTCGGCTCCGGCGCCTCAGCAGGCCGCACCGCAACCGGCTCCG
GATTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.242

100

0.62
  ssb Glaesserella parasuis strain SC1401

47.802

100

0.509
  ssb Neisseria meningitidis MC58

47.486

100

0.497
  ssb Neisseria gonorrhoeae MS11

47.486

100

0.497