Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JSQ81_RS01280 Genome accession   NZ_CP070502
Coordinates   246656..246967 (+) Length   103 a.a.
NCBI ID   WP_212605950.1    Uniprot ID   A0A975QAG2
Organism   Sporosarcina sp. Marseille-Q4063     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 241656..251967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ81_RS01250 (JSQ81_01250) - 241844..242923 (+) 1080 WP_212605946.1 hypothetical protein -
  JSQ81_RS01255 (JSQ81_01255) - 242987..243163 (-) 177 WP_172369255.1 DUF2759 domain-containing protein -
  JSQ81_RS01260 (JSQ81_01260) - 243327..243965 (+) 639 WP_212605947.1 MBL fold metallo-hydrolase -
  JSQ81_RS01265 (JSQ81_01265) - 244027..244269 (-) 243 WP_172369253.1 DUF2626 family protein -
  JSQ81_RS01270 (JSQ81_01270) comGA 244595..245596 (+) 1002 WP_212605948.1 competence type IV pilus ATPase ComGA -
  JSQ81_RS01275 (JSQ81_01275) comGB 245593..246642 (+) 1050 WP_212605949.1 competence type IV pilus assembly protein ComGB -
  JSQ81_RS01280 (JSQ81_01280) comGC 246656..246967 (+) 312 WP_212605950.1 competence type IV pilus major pilin ComGC Machinery gene
  JSQ81_RS01285 (JSQ81_01285) - 246951..247541 (+) 591 WP_212605951.1 type II secretion system protein -
  JSQ81_RS01290 (JSQ81_01290) comGF 247686..248135 (+) 450 WP_212605952.1 competence type IV pilus minor pilin ComGF -
  JSQ81_RS01295 (JSQ81_01295) - 248328..248843 (+) 516 WP_212605953.1 shikimate kinase -
  JSQ81_RS01300 (JSQ81_01300) gcvT 249293..250390 (+) 1098 WP_212605954.1 glycine cleavage system aminomethyltransferase GcvT -
  JSQ81_RS01305 (JSQ81_01305) gcvPA 250423..251790 (+) 1368 WP_212605955.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11241.09 Da        Isoelectric Point: 4.5843

>NTDB_id=540247 JSQ81_RS01280 WP_212605950.1 246656..246967(+) (comGC) [Sporosarcina sp. Marseille-Q4063]
MRKINNEDGFTLVEMLIVLAIISILILIAIPNVTKQSKVIDEKGCEAYVLMVQGQVEAYKLEKKSYPTNLGDLVTEGFLK
EDPVCPNGSALTLNAGKVNESSN

Nucleotide


Download         Length: 312 bp        

>NTDB_id=540247 JSQ81_RS01280 WP_212605950.1 246656..246967(+) (comGC) [Sporosarcina sp. Marseille-Q4063]
ATGAGAAAGATAAATAATGAAGACGGTTTTACGTTAGTAGAAATGTTAATTGTTCTTGCGATAATTTCAATTTTAATACT
CATTGCGATTCCAAACGTTACGAAACAATCAAAGGTAATTGATGAAAAGGGATGCGAAGCATATGTATTAATGGTTCAAG
GGCAGGTAGAGGCATATAAATTGGAAAAGAAATCTTATCCAACCAATCTTGGAGATTTAGTCACCGAAGGTTTCCTGAAA
GAAGATCCAGTTTGCCCGAACGGTTCAGCATTAACACTTAATGCCGGTAAAGTAAATGAGAGTTCCAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

53.763

90.291

0.485
  comGC Staphylococcus aureus MW2

43.478

89.32

0.388
  comGC Staphylococcus aureus N315

43.478

89.32

0.388
  comGC/cglC Streptococcus pneumoniae Rx1

41.053

92.233

0.379
  comGC/cglC Streptococcus pneumoniae D39

41.053

92.233

0.379
  comGC/cglC Streptococcus pneumoniae R6

41.053

92.233

0.379
  comGC/cglC Streptococcus mitis SK321

40

92.233

0.369