Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LL045_RS11865 Genome accession   NZ_CP086083
Coordinates   2417884..2418477 (-) Length   197 a.a.
NCBI ID   WP_003131995.1    Uniprot ID   Q9CDL2
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2412884..2423477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS11840 (LL045_11810) - 2412909..2413526 (-) 618 WP_278228190.1 AAA family ATPase -
  LL045_RS11845 (LL045_11815) - 2413523..2414641 (-) 1119 WP_394530239.1 ABC transporter permease -
  LL045_RS11850 (LL045_11820) - 2414946..2415515 (-) 570 WP_394530240.1 hypothetical protein -
  LL045_RS11855 (LL045_11825) - 2415735..2416619 (-) 885 WP_038602487.1 XRE/MutR family transcriptional regulator -
  LL045_RS11860 (LL045_11830) ruvB 2416756..2417757 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LL045_RS11865 (LL045_11835) ruvA 2417884..2418477 (-) 594 WP_003131995.1 Holliday junction branch migration protein RuvA Machinery gene
  LL045_RS11870 (LL045_11840) hexB 2418590..2420560 (-) 1971 WP_394530241.1 DNA mismatch repair endonuclease MutL Machinery gene
  LL045_RS11875 (LL045_11845) - 2420689..2421384 (-) 696 WP_394530242.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21166.73 Da        Isoelectric Point: 5.8174

>NTDB_id=540238 LL045_RS11865 WP_003131995.1 2417884..2418477(-) (ruvA) [Lactococcus lactis subsp. lactis strain EIP20A]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=540238 LL045_RS11865 WP_003131995.1 2417884..2418477(-) (ruvA) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGCTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAAGCCGAAAAAGCTTTATTTTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTCCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CDL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462