Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JWZ98_RS10150 Genome accession   NZ_CP070494
Coordinates   2189032..2189493 (+) Length   153 a.a.
NCBI ID   WP_033158801.1    Uniprot ID   -
Organism   Methylomonas sp. EFPC1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2184032..2194493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWZ98_RS10140 (JWZ98_10140) uvrA 2184631..2187447 (-) 2817 WP_205454184.1 excinuclease ABC subunit UvrA -
  JWZ98_RS10145 (JWZ98_10145) - 2187610..2188995 (+) 1386 WP_240348300.1 MFS transporter -
  JWZ98_RS10150 (JWZ98_10150) ssb 2189032..2189493 (+) 462 WP_033158801.1 single-stranded DNA-binding protein Machinery gene
  JWZ98_RS10155 (JWZ98_10155) - 2189914..2190051 (-) 138 WP_205454185.1 hypothetical protein -
  JWZ98_RS10160 (JWZ98_10160) - 2190085..2193885 (+) 3801 WP_275899220.1 response regulator -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17145.94 Da        Isoelectric Point: 5.7827

>NTDB_id=540202 JWZ98_RS10150 WP_033158801.1 2189032..2189493(+) (ssb) [Methylomonas sp. EFPC1]
MLNKVMLIGRLGADPEVRYMPSGDAITTIRLATDRRWKDRQTGERKQETEWHRVVFFSGLAKIAGEYLKKGSQCYVEGRI
RTQKWQGQDGQDRYTTEIVADNMHMLDSKSGGTASYSDNNTPPASSYDNRSSGPSGPQAAPASYDDFDDDIPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=540202 JWZ98_RS10150 WP_033158801.1 2189032..2189493(+) (ssb) [Methylomonas sp. EFPC1]
ATGCTGAATAAAGTTATGCTGATCGGCCGCCTCGGCGCCGATCCGGAAGTGCGCTATATGCCGAGCGGCGATGCTATTAC
CACGATACGGTTGGCCACCGATAGACGCTGGAAAGATAGGCAAACCGGTGAGCGCAAGCAAGAAACCGAATGGCATCGGG
TAGTGTTTTTCAGTGGTTTGGCGAAAATCGCCGGCGAATATCTGAAAAAAGGTAGCCAATGTTATGTCGAAGGCCGTATC
CGTACGCAAAAATGGCAAGGCCAGGACGGTCAAGATAGGTACACCACCGAAATTGTTGCCGACAATATGCACATGCTGGA
CAGTAAAAGCGGCGGCACTGCCAGCTACTCGGACAATAATACTCCGCCGGCCAGTAGCTATGACAATCGCTCTTCCGGAC
CTTCAGGCCCACAAGCTGCGCCGGCTTCCTATGACGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.093

100

0.529
  ssb Glaesserella parasuis strain SC1401

45.198

100

0.523
  ssb Neisseria meningitidis MC58

45.087

100

0.51
  ssb Neisseria gonorrhoeae MS11

44.509

100

0.503