Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JWZ97_RS04210 Genome accession   NZ_CP070491
Coordinates   974299..974787 (+) Length   162 a.a.
NCBI ID   WP_205433568.1    Uniprot ID   A0A974VTP7
Organism   Methylococcus sp. EFPC2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 969299..979787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWZ97_RS04190 (JWZ97_04190) - 970292..971554 (-) 1263 WP_205433564.1 hypothetical protein -
  JWZ97_RS04195 (JWZ97_04195) - 971662..971805 (+) 144 WP_205433565.1 hypothetical protein -
  JWZ97_RS04200 (JWZ97_04200) - 971847..973496 (+) 1650 WP_205433566.1 ATP-binding protein -
  JWZ97_RS04205 (JWZ97_04205) tsaB 973496..974197 (+) 702 WP_205433567.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  JWZ97_RS04210 (JWZ97_04210) ssb 974299..974787 (+) 489 WP_205433568.1 single-stranded DNA-binding protein Machinery gene
  JWZ97_RS04215 (JWZ97_04215) - 974862..976046 (+) 1185 WP_205433569.1 pyridoxal phosphate-dependent aminotransferase -
  JWZ97_RS04220 (JWZ97_04220) - 976795..977463 (+) 669 WP_205433570.1 cytochrome c -
  JWZ97_RS04225 (JWZ97_04225) - 977450..978889 (+) 1440 WP_240342475.1 cbb3-type cytochrome c oxidase subunit I -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17798.68 Da        Isoelectric Point: 5.3193

>NTDB_id=540171 JWZ97_RS04210 WP_205433568.1 974299..974787(+) (ssb) [Methylococcus sp. EFPC2]
MASRGVNKVILIGNLGADPEVRYMPNGGAVTTIRLATSETWKDQSGQQQERTEWHRVVFYRRLAEIAGEYLKKGGKVYIE
GSLRTSQYEKNGEKRYSTDIVANEMQMLDRVGGAPEGASSYQGGRGGDQERYAPAPAAPSRPQPSSSYGNDMDAGFDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=540171 JWZ97_RS04210 WP_205433568.1 974299..974787(+) (ssb) [Methylococcus sp. EFPC2]
ATGGCCAGTCGCGGCGTCAATAAAGTCATACTCATCGGCAATCTGGGCGCCGACCCCGAAGTCCGCTACATGCCTAACGG
CGGCGCCGTCACCACCATCCGCCTGGCCACCAGCGAAACCTGGAAGGATCAGTCCGGCCAGCAGCAGGAACGCACCGAGT
GGCACCGCGTGGTGTTTTACCGCCGTTTGGCGGAAATCGCCGGCGAATATCTCAAGAAGGGCGGCAAGGTGTATATCGAA
GGCAGCCTCAGGACCAGCCAATACGAGAAAAACGGCGAGAAGCGCTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTGGACCGCGTCGGCGGTGCGCCGGAGGGCGCATCTTCGTATCAAGGGGGGAGGGGAGGGGATCAGGAACGTTACGCAC
CTGCGCCAGCGGCGCCCAGCCGGCCCCAGCCTTCGTCCTCCTACGGCAACGACATGGATGCCGGTTTCGACGACGACATC
CCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.073

100

0.586
  ssb Neisseria gonorrhoeae MS11

52.542

100

0.574
  ssb Neisseria meningitidis MC58

51.977

100

0.568
  ssb Glaesserella parasuis strain SC1401

46.524

100

0.537