Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   LL045_RS02020 Genome accession   NZ_CP086083
Coordinates   407202..408644 (-) Length   480 a.a.
NCBI ID   WP_394530309.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 402202..413644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS01995 (LL045_01995) nox 402239..403579 (+) 1341 WP_394530308.1 H2O-forming NADH oxidase -
  LL045_RS02000 (LL045_02000) - 403667..404056 (+) 390 WP_038599186.1 single-stranded DNA-binding protein -
  LL045_RS02005 (LL045_02005) groES 404176..404460 (+) 285 WP_003131589.1 co-chaperone GroES -
  LL045_RS02010 (LL045_02010) groL 404547..406175 (+) 1629 WP_153241698.1 chaperonin GroEL -
  LL045_RS02015 (LL045_02015) vicX 406219..407031 (-) 813 WP_038599190.1 MBL fold metallo-hydrolase Regulator
  LL045_RS02020 (LL045_02020) vicK 407202..408644 (-) 1443 WP_394530309.1 ATP-binding protein Regulator
  LL045_RS02025 (LL045_02025) yycF 408637..409338 (-) 702 WP_038599193.1 response regulator YycF -
  LL045_RS02030 (LL045_02030) tmk 409516..410151 (+) 636 WP_058206001.1 dTMP kinase -
  LL045_RS02035 (LL045_02035) - 410284..411144 (+) 861 WP_394530310.1 DNA polymerase III subunit delta' -
  LL045_RS02040 (LL045_02040) yaaT 411196..411978 (+) 783 WP_195927658.1 stage 0 sporulation family protein Regulator
  LL045_RS02045 (LL045_02045) yabA 411971..412297 (+) 327 WP_003131570.1 DNA replication initiation control protein YabA -
  LL045_RS02050 (LL045_02050) rsmI 412297..413172 (+) 876 WP_038599205.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LL045_RS02055 (LL045_02055) - 413249..413440 (-) 192 WP_012897234.1 hypothetical protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 54648.13 Da        Isoelectric Point: 4.5625

>NTDB_id=540165 LL045_RS02020 WP_394530309.1 407202..408644(-) (vicK) [Lactococcus lactis subsp. lactis strain EIP20A]
MIKFFNSMIFKGVVAHLLLFVILFMSSFDYNFAHLSTFIGYYLFSLVFVLVFLNQQHRMIVNVSKQMNDIKNGYLNRDKI
PKGTSEINELYDEILKLGEDIVRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTDNDLLMEKNIVE
VLKIEDQYNFYDLLEKEPEVTIETHDTGNEAISLHIKFALFRRESGFISGIIAVLHDMTEQDKAERERRLFVSNVSHELR
TPLTSVKAYLEALEDGAIEDKETASSFINVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQIL
ETESNDLISSNFTLVRKYSEQPIWVEIDIDKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISISDQGMGIPKSDL
LKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSDGEGKGTTFSFTLPYSLEAADDWDDGTDEFEFEGNE

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=540165 LL045_RS02020 WP_394530309.1 407202..408644(-) (vicK) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGATTAAATTTTTTAATTCAATGATTTTTAAAGGAGTAGTTGCCCATCTACTTCTTTTTGTCATCCTTTTTATGAGCAG
TTTTGATTACAATTTTGCTCATTTAAGTACTTTTATCGGTTACTACCTATTTTCACTCGTCTTTGTTTTAGTCTTTCTTA
ATCAGCAGCATCGCATGATTGTGAATGTTTCTAAACAGATGAATGACATAAAAAATGGCTATTTAAATCGTGATAAAATC
CCAAAAGGGACAAGTGAAATCAATGAATTATACGACGAAATTTTAAAACTTGGTGAAGATATTGTTCGCACTCAGAACAA
TCTTGAAAATCAGAGAAATCAATTAGACAGCATCCTCGCCTATATGGTTGATGGCGTCATTGCCACCGACCGTCGCGGGA
ATATTATTATGGCCAATAAATCAGCTTTGCATTATTTGAATACAGATAATGATCTCTTGATGGAAAAAAATATTGTTGAG
GTCTTAAAAATTGAAGACCAGTATAATTTCTATGATTTATTGGAAAAGGAGCCAGAGGTAACTATTGAAACACATGATAC
TGGAAATGAAGCCATTTCACTTCACATAAAATTTGCTCTTTTTCGTCGTGAGTCTGGTTTTATTTCAGGAATTATTGCTG
TTTTACATGATATGACTGAACAAGATAAAGCAGAACGTGAACGACGCCTATTTGTTTCTAATGTTTCACACGAACTCCGA
ACTCCGCTCACCTCAGTAAAAGCCTACTTGGAAGCACTAGAAGACGGAGCCATTGAGGATAAAGAAACAGCTTCATCCTT
TATTAATGTTTCACTTACTGAAACTAATCGGATGATTCGAATGATTTCCGACCTTTTGACTTTATCAAGAATGGATCAAG
ACCGAATCGTTCTTAATAAAGAAATGATTAATTTAATTGCCTTCTTAGACTATCAAATTAACCGTTTAGACCAAATTTTA
GAAACCGAATCAAACGATTTAATCTCTTCTAATTTCACTCTCGTCAGAAAATACTCTGAACAGCCCATCTGGGTCGAAAT
TGATATCGATAAAATTGCTCAAGTCATTGACAATATCATCGGAAACGCAATTAAGTATTCCCCTAAAGGTGGAACGATTA
CAATTTCCGTTGAAAAACGTGAAAGTGACGTTCTAATCTCCATCAGTGACCAAGGAATGGGAATTCCAAAATCTGATTTA
CTTAAGATTTTTGACCGTTTCTACCGAGTTGATAACGCTTCAAGAAATTCAAAAGTTGGGGGAACAGGTTTAGGCCTCTC
TATTGTCCATGATATTGTTAAAATACATGGCGGAACAATTTTTGCAAGCTCTGATGGAGAAGGAAAAGGAACAACCTTTA
GTTTCACTCTTCCATATTCTTTAGAAGCCGCAGATGACTGGGATGATGGCACTGATGAGTTTGAATTTGAGGGTAATGAA
TAA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(348-459)

PAS domain (PAS_9)

(124-220)

His Kinase A (phospho-acceptor) domain (HisKA)

(228-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

51.079

86.875

0.444
  micB Streptococcus pneumoniae Cp1015

47.523

92.5

0.44