Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LL045_RS02015 Genome accession   NZ_CP086083
Coordinates   406219..407031 (-) Length   270 a.a.
NCBI ID   WP_038599190.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 401219..412031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS01990 (LL045_01990) ytpR 401451..402077 (+) 627 WP_146978394.1 YtpR family tRNA-binding protein -
  LL045_RS01995 (LL045_01995) nox 402239..403579 (+) 1341 WP_394530308.1 H2O-forming NADH oxidase -
  LL045_RS02000 (LL045_02000) - 403667..404056 (+) 390 WP_038599186.1 single-stranded DNA-binding protein -
  LL045_RS02005 (LL045_02005) groES 404176..404460 (+) 285 WP_003131589.1 co-chaperone GroES -
  LL045_RS02010 (LL045_02010) groL 404547..406175 (+) 1629 WP_153241698.1 chaperonin GroEL -
  LL045_RS02015 (LL045_02015) vicX 406219..407031 (-) 813 WP_038599190.1 MBL fold metallo-hydrolase Regulator
  LL045_RS02020 (LL045_02020) vicK 407202..408644 (-) 1443 WP_394530309.1 ATP-binding protein Regulator
  LL045_RS02025 (LL045_02025) yycF 408637..409338 (-) 702 WP_038599193.1 response regulator YycF -
  LL045_RS02030 (LL045_02030) tmk 409516..410151 (+) 636 WP_058206001.1 dTMP kinase -
  LL045_RS02035 (LL045_02035) - 410284..411144 (+) 861 WP_394530310.1 DNA polymerase III subunit delta' -
  LL045_RS02040 (LL045_02040) yaaT 411196..411978 (+) 783 WP_195927658.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30508.35 Da        Isoelectric Point: 5.8494

>NTDB_id=540164 LL045_RS02015 WP_038599190.1 406219..407031(-) (vicX) [Lactococcus lactis subsp. lactis strain EIP20A]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDVESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=540164 LL045_RS02015 WP_038599190.1 406219..407031(-) (vicX) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGATATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGGAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATGTTGAATCTTTTGGCGTGAGTCACGATGCCATCGCAC
CACAATTTTATCGTTTCATGAAAGATAACAAGAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCGGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCGGCTTTTAGTATTCATG
GCAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAGCTTGCTCATCTTACTATGGAT
GGTTACTTACAACAACATGATGTCGATACTAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.148

100

0.681