Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   LL045_RS02040 Genome accession   NZ_CP086083
Coordinates   411196..411978 (+) Length   260 a.a.
NCBI ID   WP_195927658.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 406196..416978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS02015 (LL045_02015) vicX 406219..407031 (-) 813 WP_038599190.1 MBL fold metallo-hydrolase Regulator
  LL045_RS02020 (LL045_02020) vicK 407202..408644 (-) 1443 WP_394530309.1 ATP-binding protein Regulator
  LL045_RS02025 (LL045_02025) yycF 408637..409338 (-) 702 WP_038599193.1 response regulator YycF -
  LL045_RS02030 (LL045_02030) tmk 409516..410151 (+) 636 WP_058206001.1 dTMP kinase -
  LL045_RS02035 (LL045_02035) - 410284..411144 (+) 861 WP_394530310.1 DNA polymerase III subunit delta' -
  LL045_RS02040 (LL045_02040) yaaT 411196..411978 (+) 783 WP_195927658.1 stage 0 sporulation family protein Regulator
  LL045_RS02045 (LL045_02045) yabA 411971..412297 (+) 327 WP_003131570.1 DNA replication initiation control protein YabA -
  LL045_RS02050 (LL045_02050) rsmI 412297..413172 (+) 876 WP_038599205.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LL045_RS02055 (LL045_02055) - 413249..413440 (-) 192 WP_012897234.1 hypothetical protein -
  LL045_RS02060 (LL045_02060) mvk 413503..414435 (-) 933 WP_038599208.1 mevalonate kinase -
  LL045_RS02065 (LL045_02065) mvaD 414740..415696 (+) 957 WP_038599211.1 diphosphomevalonate decarboxylase -
  LL045_RS02070 (LL045_02070) - 415683..416672 (+) 990 WP_038599214.1 mevalonate kinase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29816.35 Da        Isoelectric Point: 6.6377

>NTDB_id=540167 LL045_RS02040 WP_195927658.1 411196..411978(+) (yaaT) [Lactococcus lactis subsp. lactis strain EIP20A]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVRKVNEEDLQVIAKLEERSKQAK
DKVRQLVIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNKLNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGKGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=540167 LL045_RS02040 WP_195927658.1 411196..411978(+) (yaaT) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGCTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCGAATCTTGAAATTC
ACCACACGATTGTGCGTAAAGTAAATGAGGAGGATCTCCAAGTTATTGCAAAACTTGAGGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTGTCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTTGACCAAATGCA
ACTTTTTATTTCGTTTACGGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAACAACTTTCAGAATCA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCGAAAATTCATGGTGGACTTGGACCTTGTGGGCGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATAA
ATTAAACGGTCTTTGTGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACTTCAGAGGGAAAAGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

46.119

84.231

0.388