Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JQX68_RS21065 Genome accession   NZ_CP070483
Coordinates   4137249..4137767 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus sp. LJBS06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4132249..4142767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS21035 (JQX68_21035) - 4132754..4134109 (+) 1356 WP_147772789.1 MFS transporter -
  JQX68_RS21040 (JQX68_21040) - 4134143..4134697 (-) 555 WP_069150713.1 sugar O-acetyltransferase -
  JQX68_RS21045 (JQX68_21045) - 4134715..4135095 (-) 381 WP_014666135.1 VOC family protein -
  JQX68_RS21050 (JQX68_21050) - 4135150..4136085 (-) 936 WP_205440446.1 LacI family DNA-binding transcriptional regulator -
  JQX68_RS21055 (JQX68_21055) xth 4136146..4136904 (-) 759 WP_205440447.1 exodeoxyribonuclease III -
  JQX68_RS21060 (JQX68_21060) rpsR 4136965..4137204 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  JQX68_RS21065 (JQX68_21065) ssbA 4137249..4137767 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  JQX68_RS21070 (JQX68_21070) rpsF 4137808..4138095 (-) 288 WP_014115888.1 30S ribosomal protein S6 -
  JQX68_RS21075 (JQX68_21075) ychF 4138206..4139306 (-) 1101 WP_205440448.1 redox-regulated ATPase YchF -
  JQX68_RS21080 (JQX68_21080) - 4139433..4141436 (-) 2004 WP_205440449.1 molybdopterin-dependent oxidoreductase -
  JQX68_RS21085 (JQX68_21085) - 4141487..4141693 (-) 207 WP_003219236.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=540052 JQX68_RS21065 WP_003219228.1 4137249..4137767(-) (ssbA) [Bacillus sp. LJBS06]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=540052 JQX68_RS21065 WP_003219228.1 4137249..4137767(-) (ssbA) [Bacillus sp. LJBS06]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCTGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAATTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGATGGC
AAACCGATTGACATCTCGGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378