Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JQX68_RS16140 Genome accession   NZ_CP070483
Coordinates   3163722..3164366 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. LJBS06     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3158722..3169366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS16105 (JQX68_16105) - 3159914..3160345 (+) 432 WP_014665185.1 Na(+)/H(+) antiporter subunit B -
  JQX68_RS16110 (JQX68_16110) - 3160345..3160686 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  JQX68_RS16115 (JQX68_16115) - 3160679..3162160 (+) 1482 WP_147772472.1 Na+/H+ antiporter subunit D -
  JQX68_RS16120 (JQX68_16120) - 3162166..3162642 (+) 477 WP_014665187.1 Na+/H+ antiporter subunit E -
  JQX68_RS16125 (JQX68_16125) - 3162642..3162926 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  JQX68_RS16130 (JQX68_16130) mnhG 3162910..3163284 (+) 375 WP_014665188.1 monovalent cation/H(+) antiporter subunit G -
  JQX68_RS16135 (JQX68_16135) - 3163323..3163703 (-) 381 WP_069150216.1 hotdog fold thioesterase -
  JQX68_RS16140 (JQX68_16140) comA 3163722..3164366 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  JQX68_RS16145 (JQX68_16145) comP 3164447..3166756 (-) 2310 WP_205440345.1 two-component system sensor histidine kinase ComP Regulator
  JQX68_RS16150 (JQX68_16150) comX 3166771..3166938 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  JQX68_RS16155 (JQX68_16155) comQ 3166926..3167825 (-) 900 WP_103750156.1 ComX modifying isoprenyl transferase ComQ Regulator
  JQX68_RS16160 (JQX68_16160) degQ 3168010..3168150 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  JQX68_RS16165 (JQX68_16165) - 3168372..3168497 (+) 126 WP_128422565.1 hypothetical protein -
  JQX68_RS16170 (JQX68_16170) - 3168612..3168980 (+) 369 WP_014665193.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=540035 JQX68_RS16140 WP_003220716.1 3163722..3164366(-) (comA) [Bacillus sp. LJBS06]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=540035 JQX68_RS16140 WP_003220716.1 3163722..3164366(-) (comA) [Bacillus sp. LJBS06]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGTGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTGGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTGCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCACTTGAGCAAGCGGTCCATAGAATA
CAGCCTGACATCAATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1