Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JT748_RS23905 Genome accession   NZ_CP070464
Coordinates   4959225..4959749 (-) Length   174 a.a.
NCBI ID   WP_004151744.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain B28906     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4954225..4964749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JT748_RS23895 (JT748_23895) - 4954674..4956932 (-) 2259 WP_004177845.1 TonB-dependent siderophore receptor -
  JT748_RS23900 (JT748_23900) - 4957520..4959100 (+) 1581 WP_017880012.1 lytic transglycosylase F -
  JT748_RS23905 (JT748_23905) ssb 4959225..4959749 (-) 525 WP_004151744.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JT748_RS23910 (JT748_23910) uvrA 4960001..4962826 (+) 2826 WP_004146620.1 excinuclease ABC subunit UvrA -
  JT748_RS23915 (JT748_23915) - 4962827..4963183 (-) 357 WP_002884953.1 MmcQ/YjbR family DNA-binding protein -
  JT748_RS23920 (JT748_23920) - 4963187..4963603 (-) 417 WP_002884951.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JT748_RS23925 (JT748_23925) aphA 4963734..4964447 (-) 714 WP_004151745.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18711.70 Da        Isoelectric Point: 5.2358

>NTDB_id=539896 JT748_RS23905 WP_004151744.1 4959225..4959749(-) (ssb) [Klebsiella pneumoniae strain B28906]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=539896 JT748_RS23905 WP_004151744.1 4959225..4959749(-) (ssb) [Klebsiella pneumoniae strain B28906]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCTGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCTGGTGAGTATCTGCGTAAAGGCTCTCAGGTGTACATT
GAAGGCCAGCTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACCGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCGCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGGCCCCGGCAGCGCCT
TCCAACGAACCGCCGATGGACTTCGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.776
  ssb Glaesserella parasuis strain SC1401

59.239

100

0.626
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5