Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JT742_RS24450 Genome accession   NZ_CP070440
Coordinates   5055686..5056210 (-) Length   174 a.a.
NCBI ID   WP_004151744.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain B9067     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5050686..5061210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JT742_RS24440 (JT742_24440) - 5051130..5053388 (-) 2259 WP_117140837.1 TonB-dependent siderophore receptor -
  JT742_RS24445 (JT742_24445) - 5053977..5055557 (+) 1581 WP_032454565.1 lytic transglycosylase F -
  JT742_RS24450 (JT742_24450) ssb 5055686..5056210 (-) 525 WP_004151744.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JT742_RS24455 (JT742_24455) uvrA 5056465..5059290 (+) 2826 WP_023291635.1 excinuclease ABC subunit UvrA -
  JT742_RS24460 (JT742_24460) - 5059291..5059647 (-) 357 WP_109546749.1 MmcQ/YjbR family DNA-binding protein -
  JT742_RS24465 (JT742_24465) - 5059651..5060067 (-) 417 WP_004206303.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JT742_RS24470 (JT742_24470) aphA 5060199..5060912 (-) 714 WP_004151745.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18711.70 Da        Isoelectric Point: 5.2358

>NTDB_id=539780 JT742_RS24450 WP_004151744.1 5055686..5056210(-) (ssb) [Klebsiella quasipneumoniae strain B9067]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=539780 JT742_RS24450 WP_004151744.1 5055686..5056210(-) (ssb) [Klebsiella quasipneumoniae strain B9067]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCAGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCTGGTGAGTACCTGCGTAAAGGCTCTCAGGTGTACATT
GAAGGCCAGCTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACTGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCTCAGCAGCAGGCTCCGGCAGCGCCT
TCCAACGAACCGCCGATGGACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.776
  ssb Glaesserella parasuis strain SC1401

59.239

100

0.626
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5