Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JRY11_RS03905 | Genome accession | NZ_CP070382 |
| Coordinates | 740986..741486 (+) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain KF140 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 718179..745416 | 740986..741486 | within | 0 |
Gene organization within MGE regions
Location: 718179..745416
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JRY11_RS03745 (JRY11_000755) | - | 718179..718499 (-) | 321 | WP_043994747.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| JRY11_RS03750 (JRY11_000756) | - | 718603..718932 (-) | 330 | WP_179107769.1 | hypothetical protein | - |
| JRY11_RS12540 (JRY11_000757) | - | 719080..719214 (-) | 135 | WP_023190201.1 | hypothetical protein | - |
| JRY11_RS03755 (JRY11_000758) | - | 719419..720009 (-) | 591 | WP_058212822.1 | HK97 family phage prohead protease | - |
| JRY11_RS03760 (JRY11_000759) | - | 720018..720626 (-) | 609 | WP_248554356.1 | hypothetical protein | - |
| JRY11_RS03765 (JRY11_000760) | - | 720653..720835 (-) | 183 | WP_179107768.1 | hypothetical protein | - |
| JRY11_RS03770 (JRY11_000761) | - | 721056..722690 (-) | 1635 | WP_248554357.1 | phage/plasmid primase, P4 family | - |
| JRY11_RS03775 (JRY11_000762) | - | 722701..723495 (-) | 795 | WP_179107766.1 | bifunctional DNA primase/polymerase | - |
| JRY11_RS03780 (JRY11_000763) | - | 723507..723833 (-) | 327 | WP_060416627.1 | hypothetical protein | - |
| JRY11_RS03785 (JRY11_000764) | - | 723820..724014 (-) | 195 | WP_179107765.1 | hypothetical protein | - |
| JRY11_RS03790 (JRY11_000765) | - | 724011..724265 (-) | 255 | WP_179107764.1 | hypothetical protein | - |
| JRY11_RS03795 (JRY11_000766) | - | 724262..724501 (-) | 240 | WP_179107763.1 | hypothetical protein | - |
| JRY11_RS03800 (JRY11_000767) | - | 724544..724825 (-) | 282 | WP_248554358.1 | hypothetical protein | - |
| JRY11_RS03805 (JRY11_000768) | - | 724837..725262 (-) | 426 | WP_248554359.1 | hypothetical protein | - |
| JRY11_RS03810 (JRY11_000769) | - | 725267..725461 (-) | 195 | WP_023188559.1 | DUF1655 domain-containing protein | - |
| JRY11_RS03815 (JRY11_000770) | - | 725536..726225 (-) | 690 | WP_046782461.1 | Bro-N domain-containing protein | - |
| JRY11_RS03820 (JRY11_000771) | - | 726398..726628 (-) | 231 | WP_023164721.1 | hypothetical protein | - |
| JRY11_RS03825 (JRY11_000772) | - | 726759..727229 (+) | 471 | WP_023164720.1 | helix-turn-helix transcriptional regulator | - |
| JRY11_RS03830 | - | 727368..727580 (+) | 213 | WP_058212807.1 | hypothetical protein | - |
| JRY11_RS03835 (JRY11_000774) | - | 728162..728971 (+) | 810 | WP_129300345.1 | hypothetical protein | - |
| JRY11_RS03840 (JRY11_000775) | - | 728973..729404 (+) | 432 | WP_129300346.1 | hypothetical protein | - |
| JRY11_RS03845 (JRY11_000776) | - | 730102..730428 (+) | 327 | WP_179107760.1 | hypothetical protein | - |
| JRY11_RS03850 (JRY11_000777) | - | 731086..731250 (+) | 165 | WP_179107759.1 | bacteriocin | - |
| JRY11_RS03855 (JRY11_000778) | - | 731372..731677 (+) | 306 | WP_046782455.1 | bacteriocin immunity protein | - |
| JRY11_RS03860 (JRY11_000779) | - | 731934..733118 (+) | 1185 | WP_248554360.1 | site-specific integrase | - |
| JRY11_RS03865 (JRY11_000780) | - | 733407..733853 (+) | 447 | WP_025017069.1 | hypothetical protein | - |
| JRY11_RS12625 | - | 733942..734214 (-) | 273 | WP_023190154.1 | chorismate mutase | - |
| JRY11_RS03875 (JRY11_000782) | - | 734724..735212 (+) | 489 | WP_003131959.1 | GAF domain-containing protein | - |
| JRY11_RS03880 (JRY11_000783) | - | 735244..735885 (+) | 642 | WP_023190151.1 | phosphotransferase family protein | - |
| JRY11_RS03885 (JRY11_000784) | dnaX | 735934..737592 (+) | 1659 | WP_023190149.1 | DNA polymerase III subunit gamma/tau | - |
| JRY11_RS03890 (JRY11_000785) | - | 737627..739093 (-) | 1467 | WP_017865200.1 | amino acid permease | - |
| JRY11_RS03895 (JRY11_000786) | - | 739617..740471 (+) | 855 | WP_012898664.1 | undecaprenyl-diphosphate phosphatase | - |
| JRY11_RS03900 (JRY11_000787) | rpsF | 740663..740956 (+) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| JRY11_RS03905 (JRY11_000788) | ssb | 740986..741486 (+) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| JRY11_RS03910 (JRY11_000789) | rpsR | 741660..741905 (+) | 246 | WP_023190141.1 | 30S ribosomal protein S18 | - |
| JRY11_RS03915 (JRY11_000790) | - | 742105..742878 (+) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| JRY11_RS03920 (JRY11_000791) | - | 742952..743260 (-) | 309 | WP_017865196.1 | DUF960 domain-containing protein | - |
| JRY11_RS03925 (JRY11_000792) | - | 743298..744146 (-) | 849 | WP_012898662.1 | MurR/RpiR family transcriptional regulator | - |
| JRY11_RS03930 (JRY11_000793) | gnd | 744511..745416 (+) | 906 | WP_023190136.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=539585 JRY11_RS03905 WP_003131953.1 740986..741486(+) (ssb) [Lactococcus lactis strain KF140]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=539585 JRY11_RS03905 WP_003131953.1 740986..741486(+) (ssb) [Lactococcus lactis strain KF140]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |