Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JWJ88_RS14325 Genome accession   NZ_CP070371
Coordinates   241239..241742 (-) Length   167 a.a.
NCBI ID   WP_205296463.1    Uniprot ID   -
Organism   Paracoccus methylovorus strain H4-D09     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 236239..246742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWJ88_RS14305 (JWJ88_14300) - 236972..237676 (+) 705 WP_205296459.1 ABC transporter ATP-binding protein -
  JWJ88_RS14310 (JWJ88_14305) - 237688..238947 (+) 1260 WP_240200331.1 Zn-dependent hydrolase -
  JWJ88_RS14315 (JWJ88_14310) - 238944..240428 (+) 1485 WP_205296461.1 M81 family metallopeptidase -
  JWJ88_RS14320 (JWJ88_14315) - 240437..241207 (+) 771 WP_205296462.1 FadR/GntR family transcriptional regulator -
  JWJ88_RS14325 (JWJ88_14320) ssb 241239..241742 (-) 504 WP_205296463.1 single-stranded DNA-binding protein Machinery gene
  JWJ88_RS14330 (JWJ88_14325) - 241952..242599 (+) 648 WP_205296464.1 lytic transglycosylase domain-containing protein -
  JWJ88_RS14335 (JWJ88_14330) - 242653..243207 (-) 555 WP_205296465.1 YSC84-related protein -
  JWJ88_RS14340 (JWJ88_14335) hemB 243297..244295 (-) 999 WP_205296466.1 porphobilinogen synthase -
  JWJ88_RS14345 (JWJ88_14340) - 244451..245017 (+) 567 WP_205296467.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17931.57 Da        Isoelectric Point: 6.4863

>NTDB_id=539506 JWJ88_RS14325 WP_205296463.1 241239..241742(-) (ssb) [Paracoccus methylovorus strain H4-D09]
MAGSVNKVILVGNLGQDPEVRSFPSGGKVANLRIATSETWKDRNTGERKERTEWHTVAIYSEPLVRVAEQYLKKGSKVYV
EGQLETRKWQDQNGNDRYSTEVALRPFRSELHMLDSRGGAGGGGRDDSYGGGYGGGSYGGASGSGSSAPSGGGQPQSRPD
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=539506 JWJ88_RS14325 WP_205296463.1 241239..241742(-) (ssb) [Paracoccus methylovorus strain H4-D09]
ATGGCAGGCAGCGTGAACAAGGTGATCCTGGTCGGTAATCTGGGTCAGGACCCAGAGGTCCGCAGCTTCCCCAGCGGCGG
CAAGGTCGCCAACCTGCGTATCGCGACCTCGGAGACATGGAAGGACCGCAACACCGGCGAGCGCAAGGAGCGCACCGAAT
GGCACACGGTCGCCATCTATTCCGAGCCCTTGGTCCGCGTGGCCGAGCAATATCTGAAAAAGGGCTCGAAAGTCTATGTC
GAGGGCCAGCTGGAAACCCGCAAGTGGCAGGACCAGAACGGCAACGACCGCTATTCGACCGAAGTGGCGTTGCGGCCCTT
CCGCAGCGAGTTGCACATGCTCGACAGCCGCGGTGGAGCGGGCGGCGGCGGTCGCGATGACAGTTATGGCGGCGGCTACG
GTGGCGGCAGCTACGGTGGCGCGAGCGGTAGTGGCAGCAGCGCGCCATCGGGCGGCGGACAGCCGCAGAGCCGTCCCGAT
TTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.335

100

0.563
  ssb Glaesserella parasuis strain SC1401

47.849

100

0.533
  ssb Neisseria gonorrhoeae MS11

42.308

100

0.461
  ssb Neisseria meningitidis MC58

41.758

100

0.455