Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JT366_RS16870 | Genome accession | NZ_CP070367 |
| Coordinates | 3558402..3558878 (-) | Length | 158 a.a. |
| NCBI ID | WP_205396482.1 | Uniprot ID | - |
| Organism | Sphingomonas paucimobilis strain ZJSH1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3525553..3576028 | 3558402..3558878 | within | 0 |
Gene organization within MGE regions
Location: 3525553..3576028
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JT366_RS16720 (JT366_16720) | - | 3525553..3527376 (+) | 1824 | WP_007405800.1 | UvrD-helicase domain-containing protein | - |
| JT366_RS16725 (JT366_16725) | - | 3527576..3529393 (-) | 1818 | WP_007405833.1 | site-specific integrase | - |
| JT366_RS16730 (JT366_16730) | - | 3529889..3530320 (-) | 432 | WP_205396457.1 | hypothetical protein | - |
| JT366_RS16735 (JT366_16735) | - | 3530317..3530904 (-) | 588 | WP_205396458.1 | glycoside hydrolase family 19 protein | - |
| JT366_RS16740 (JT366_16740) | - | 3531003..3531338 (-) | 336 | WP_205396459.1 | hypothetical protein | - |
| JT366_RS16745 (JT366_16745) | - | 3531335..3531823 (-) | 489 | WP_205396460.1 | hypothetical protein | - |
| JT366_RS16750 (JT366_16750) | - | 3531884..3533281 (-) | 1398 | WP_205396461.1 | hypothetical protein | - |
| JT366_RS16755 (JT366_16755) | - | 3533286..3538382 (-) | 5097 | WP_205396462.1 | hypothetical protein | - |
| JT366_RS16760 (JT366_16760) | - | 3539019..3539450 (-) | 432 | WP_205396463.1 | DUF6950 family protein | - |
| JT366_RS16765 (JT366_16765) | - | 3539447..3540088 (-) | 642 | WP_205396464.1 | hypothetical protein | - |
| JT366_RS16770 (JT366_16770) | - | 3540085..3540681 (-) | 597 | WP_205396465.1 | hypothetical protein | - |
| JT366_RS16775 (JT366_16775) | - | 3540678..3544157 (-) | 3480 | WP_205396466.1 | phage tail tape measure protein | - |
| JT366_RS19400 (JT366_16780) | - | 3544171..3544452 (-) | 282 | WP_205396717.1 | phage tail assembly chaperone | - |
| JT366_RS16785 (JT366_16785) | - | 3544482..3544841 (-) | 360 | WP_205396467.1 | hypothetical protein | - |
| JT366_RS16790 (JT366_16790) | - | 3544844..3545272 (-) | 429 | WP_205396468.1 | phage tail tube protein | - |
| JT366_RS16795 (JT366_16795) | - | 3545297..3545488 (-) | 192 | WP_205396469.1 | hypothetical protein | - |
| JT366_RS16800 (JT366_16800) | gp17 | 3545493..3545897 (-) | 405 | WP_205396470.1 | tail completion protein gp17 | - |
| JT366_RS16805 (JT366_16805) | - | 3545903..3546316 (-) | 414 | WP_205396471.1 | HK97 gp10 family phage protein | - |
| JT366_RS16810 (JT366_16810) | - | 3546313..3546648 (-) | 336 | WP_205396472.1 | phage head closure protein | - |
| JT366_RS16815 (JT366_16815) | - | 3546648..3547193 (-) | 546 | WP_205396473.1 | head-tail connector protein | - |
| JT366_RS16820 (JT366_16820) | - | 3547209..3547862 (-) | 654 | WP_205396474.1 | hypothetical protein | - |
| JT366_RS16825 (JT366_16825) | - | 3547875..3548324 (-) | 450 | WP_205396475.1 | hypothetical protein | - |
| JT366_RS16830 (JT366_16830) | - | 3548394..3549698 (-) | 1305 | WP_205396476.1 | phage major capsid protein | - |
| JT366_RS16835 (JT366_16835) | - | 3549788..3550660 (-) | 873 | WP_205396477.1 | S49 family peptidase | - |
| JT366_RS16840 (JT366_16840) | - | 3550662..3551855 (-) | 1194 | WP_205396478.1 | phage portal protein | - |
| JT366_RS16845 (JT366_16845) | - | 3551918..3553669 (-) | 1752 | WP_240193716.1 | terminase TerL endonuclease subunit | - |
| JT366_RS16850 (JT366_16850) | - | 3553683..3554150 (-) | 468 | WP_240193717.1 | hypothetical protein | - |
| JT366_RS16855 (JT366_16855) | - | 3554229..3554585 (-) | 357 | WP_205396480.1 | HNH endonuclease | - |
| JT366_RS16860 (JT366_16860) | - | 3554749..3555285 (-) | 537 | WP_240193718.1 | DUF6362 family protein | - |
| JT366_RS16865 (JT366_16865) | - | 3555479..3558322 (-) | 2844 | WP_205396481.1 | phage/plasmid primase, P4 family | - |
| JT366_RS16870 (JT366_16870) | ssb | 3558402..3558878 (-) | 477 | WP_205396482.1 | single-stranded DNA-binding protein | Machinery gene |
| JT366_RS16875 (JT366_16875) | - | 3558875..3559636 (-) | 762 | WP_205396483.1 | Rha family transcriptional regulator | - |
| JT366_RS16880 (JT366_16880) | - | 3559815..3560519 (-) | 705 | WP_205396484.1 | hypothetical protein | - |
| JT366_RS16885 (JT366_16885) | dnaN | 3560554..3561666 (-) | 1113 | WP_205396485.1 | DNA polymerase III subunit beta | - |
| JT366_RS16890 (JT366_16890) | - | 3561663..3562223 (-) | 561 | WP_205396486.1 | hypothetical protein | - |
| JT366_RS16895 (JT366_16895) | - | 3562223..3562495 (-) | 273 | WP_205396487.1 | hypothetical protein | - |
| JT366_RS16900 (JT366_16900) | - | 3562495..3562974 (-) | 480 | WP_205396488.1 | hypothetical protein | - |
| JT366_RS16905 (JT366_16905) | - | 3562971..3563663 (-) | 693 | WP_205396489.1 | hypothetical protein | - |
| JT366_RS16910 (JT366_16910) | - | 3563660..3563935 (-) | 276 | WP_205396490.1 | helix-turn-helix transcriptional regulator | - |
| JT366_RS16915 (JT366_16915) | - | 3563964..3564743 (+) | 780 | WP_205396491.1 | XRE family transcriptional regulator | - |
| JT366_RS16920 (JT366_16920) | - | 3565318..3565560 (+) | 243 | WP_205396492.1 | hypothetical protein | - |
| JT366_RS16925 (JT366_16925) | - | 3565560..3566039 (+) | 480 | WP_205396493.1 | hypothetical protein | - |
| JT366_RS16930 (JT366_16930) | - | 3566036..3566590 (+) | 555 | WP_205396494.1 | hypothetical protein | - |
| JT366_RS16935 (JT366_16935) | - | 3566593..3566994 (+) | 402 | WP_205396495.1 | hypothetical protein | - |
| JT366_RS16940 (JT366_16940) | - | 3566997..3568871 (+) | 1875 | WP_205396496.1 | ParB/RepB/Spo0J family partition protein | - |
| JT366_RS16945 (JT366_16945) | - | 3568873..3569730 (+) | 858 | WP_205396497.1 | hypothetical protein | - |
| JT366_RS16950 (JT366_16950) | - | 3569727..3569906 (+) | 180 | WP_205396498.1 | hypothetical protein | - |
| JT366_RS16955 (JT366_16955) | - | 3569903..3570379 (+) | 477 | WP_205396499.1 | hypothetical protein | - |
| JT366_RS16960 (JT366_16960) | - | 3570376..3570630 (+) | 255 | WP_205396500.1 | hypothetical protein | - |
| JT366_RS16965 (JT366_16965) | - | 3570636..3571727 (+) | 1092 | WP_240193719.1 | tyrosine-type recombinase/integrase | - |
| JT366_RS16975 (JT366_16975) | recJ | 3571870..3573624 (-) | 1755 | WP_007405848.1 | single-stranded-DNA-specific exonuclease RecJ | - |
| JT366_RS16980 (JT366_16980) | - | 3573715..3574401 (-) | 687 | WP_007405820.1 | prolyl hydroxylase family protein | - |
| JT366_RS16985 (JT366_16985) | - | 3574466..3575356 (-) | 891 | WP_042469012.1 | RcnB family protein | - |
| JT366_RS16990 (JT366_16990) | - | 3575471..3576028 (-) | 558 | WP_007405759.1 | (2Fe-2S)-binding protein | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 16785.49 Da Isoelectric Point: 7.0206
>NTDB_id=539499 JT366_RS16870 WP_205396482.1 3558402..3558878(-) (ssb) [Sphingomonas paucimobilis strain ZJSH1]
MSSVNKVILVGNLGRDPEVRSFQNGGKVAELRIATSETWKDRNSGERKEKVEWHTVKIFNEGLVGVAERFLRKGSKVYVE
GALTTRKWQDQQGNDRYSTEVTLQGFSAKLVLLDGADGGQRGSRSTGGTQGGASSGAGGGGGFGGGGFTDDLDDDVPF
MSSVNKVILVGNLGRDPEVRSFQNGGKVAELRIATSETWKDRNSGERKEKVEWHTVKIFNEGLVGVAERFLRKGSKVYVE
GALTTRKWQDQQGNDRYSTEVTLQGFSAKLVLLDGADGGQRGSRSTGGTQGGASSGAGGGGGFGGGGFTDDLDDDVPF
Nucleotide
Download Length: 477 bp
>NTDB_id=539499 JT366_RS16870 WP_205396482.1 3558402..3558878(-) (ssb) [Sphingomonas paucimobilis strain ZJSH1]
ATGAGCAGCGTCAACAAGGTCATCCTGGTCGGCAATCTCGGCCGCGATCCCGAAGTCCGGTCTTTTCAGAACGGCGGCAA
GGTGGCCGAGCTGCGCATTGCGACGTCGGAGACGTGGAAGGATCGCAACAGCGGCGAGCGCAAGGAAAAGGTCGAGTGGC
ACACGGTCAAGATCTTCAACGAGGGACTGGTCGGCGTGGCCGAGCGGTTCCTGCGCAAGGGATCGAAGGTCTATGTCGAG
GGCGCGTTGACCACTCGCAAGTGGCAGGACCAGCAGGGCAATGACCGCTATTCGACCGAGGTGACGCTTCAGGGTTTCTC
CGCGAAGCTGGTCCTGCTCGACGGGGCCGATGGCGGCCAGCGTGGCAGCCGGTCGACCGGCGGGACGCAGGGCGGCGCGT
CTTCGGGCGCAGGCGGTGGTGGTGGTTTCGGTGGCGGCGGCTTCACCGACGACCTGGACGACGACGTCCCCTTCTGA
ATGAGCAGCGTCAACAAGGTCATCCTGGTCGGCAATCTCGGCCGCGATCCCGAAGTCCGGTCTTTTCAGAACGGCGGCAA
GGTGGCCGAGCTGCGCATTGCGACGTCGGAGACGTGGAAGGATCGCAACAGCGGCGAGCGCAAGGAAAAGGTCGAGTGGC
ACACGGTCAAGATCTTCAACGAGGGACTGGTCGGCGTGGCCGAGCGGTTCCTGCGCAAGGGATCGAAGGTCTATGTCGAG
GGCGCGTTGACCACTCGCAAGTGGCAGGACCAGCAGGGCAATGACCGCTATTCGACCGAGGTGACGCTTCAGGGTTTCTC
CGCGAAGCTGGTCCTGCTCGACGGGGCCGATGGCGGCCAGCGTGGCAGCCGGTCGACCGGCGGGACGCAGGGCGGCGCGT
CTTCGGGCGCAGGCGGTGGTGGTGGTTTCGGTGGCGGCGGCTTCACCGACGACCTGGACGACGACGTCCCCTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
45.946 |
100 |
0.538 |
| ssb | Vibrio cholerae strain A1552 |
46.552 |
100 |
0.513 |
| ssb | Neisseria gonorrhoeae MS11 |
33.52 |
100 |
0.38 |
| ssb | Neisseria meningitidis MC58 |
32.571 |
100 |
0.361 |